| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 689 (0.980) | 81 (0.150) | 19/88 | NT | 14.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 443 (0.810) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 993 total aligned reads displayed.
AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCAC > CP009273/3920711‑3920844 | cattacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgg > 1:10523066‑M1/68‑68 (MQ=255) attacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcggg < 1:23762033‑M1/2‑1 (MQ=255) tacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGc > 1:29343204‑M1/65‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg < 1:1737177/67‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg < 1:55214166/67‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:19478710/1‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:34974943/1‑68 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:25630965/68‑1 (MQ=255) tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc < 1:55810128/68‑1 (MQ=255) tCGAAGTGGTTCATTAACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:9007125/1‑68 (MQ=255) tCGAAGTGGTTCATTAACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc > 1:35521577/1‑68 (MQ=255) cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg < 1:4930848‑M1/8‑1 (MQ=255) gttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAgg > 1:43102297‑M1/60‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:28979639/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:27635371/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:110691/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:11618234/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:41483553/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:44410293/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:21892899/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:20920845/1‑68 (MQ=255) gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg > 1:20255603/1‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:22257557‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:8531449‑M1/58‑68 (MQ=255) tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:53118330‑M1/58‑68 (MQ=255) ggTTCATTCACTGGCGATGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:28416849/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:52367320/66‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:48626608/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc < 1:14984750/68‑1 (MQ=255) ggTTCATTCACTGGCGAAGGGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:5444905/67‑1 (MQ=255) ggTTCATTCACTGCCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg < 1:13954726/66‑1 (MQ=255) ggTGCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg < 1:45280545/67‑1 (MQ=255) cccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCt > 1:52749634‑M1/57‑68 (MQ=255) cccaggcccacttgtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc > 1:43845832‑M1/57‑67 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:37141048/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:38746731/68‑1 (MQ=255) tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt < 1:7937159/68‑1 (MQ=255) cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa < 1:23202061/68‑1 (MQ=255) tcccactggtcaacatagaccgcgtgcaacggcgaaagacggtcttcagcgGGGCGAAGGGCTGTac < 1:12709955‑M1/16‑1 (MQ=255) tcccactggtcaacatagaccgagtgcaacggcgaaagacggtcttcatcgGGGCGCAGGGCtgtgc < 1:47207680‑M1/16‑3 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac < 1:29834740/68‑1 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:3058070/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:31299776/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:26060177/1‑68 (MQ=255) tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:28010210/1‑68 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac > 1:46596787/1‑67 (MQ=255) actggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGc < 1:40954049‑M1/20‑1 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca < 1:12171682/68‑1 (MQ=255) ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca < 1:51830736/68‑1 (MQ=255) ggCGAAGGGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca < 1:53459205/68‑1 (MQ=255) cGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACAt < 1:19960943/67‑1 (MQ=255) gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGa > 1:42724542/1‑68 (MQ=255) gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGa > 1:16998632/1‑68 (MQ=255) tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAg > 1:5678451/1‑67 (MQ=255) tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAg > 1:49570780/1‑67 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGcc < 1:1081464/68‑1 (MQ=255) tagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCCCATGAAAGc < 1:39689373‑M1/30‑1 (MQ=255) aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGccc < 1:39187152/67‑1 (MQ=255) aaaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGccc < 1:15793952/67‑1 (MQ=255) aaCGTCAGCCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCtt > 1:13526844/1‑68 (MQ=255) aaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCt > 1:25405322/1‑67 (MQ=255) aaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCt > 1:43462892/1‑67 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGCAGGGCTGTACCCGCCCATGATAGCcctgc < 1:3637148‑M1/35‑3 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGGTGTACACGCACATGAAAGCCCTTc < 1:24872798‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGGTGTACACGCACATGAAAGCCCTTc < 1:57915859‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCccttag < 1:35985681‑M1/36‑3 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc < 1:57422932‑M1/35‑1 (MQ=255) ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc < 1:37597612‑M1/35‑1 (MQ=255) cGTCAGCCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc > 1:26844632/1‑67 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGGTGTACACGCACATGAAAGCCCTTCGcc < 1:43584881/67‑1 (MQ=255) aCCTTATGGCAACACGACTTCAGCCCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:47018825/68‑1 (MQ=255) ccTTATGGCAACACGACTTCAGCGCGGGGGATGGGCTGTACACGCACATGAAAGCCCTGCGccc‑c < 1:31723692/65‑1 (MQ=255) ccTTAGGGCCACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:32158427/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:6917140/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:47977349/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:7400193/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:6510596/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGa < 1:33468213/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:4592492/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:19035596/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:49007204/1‑68 (MQ=255) ccTTAGGCCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:53977909/65‑1 (MQ=255) gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAg > 1:44748097/1‑67 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACCCGCACATGCAAGCCCTTCGCCC‑CGATGAAGAcc > 1:50445313/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:24156515/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:51241102/1‑68 (MQ=255) gCAACACGACTGCAGCGCGGGCGAAGGGCTGAACACGCACATGAAAGCCCTTCGCCCGCGCTGAAgt < 1:10077683/67‑2 (MQ=37) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc < 1:14439229/67‑1 (MQ=255) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:18003988/68‑1 (MQ=255) cacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCt < 1:37978302/68‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt < 1:34336899‑M1/55‑1 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:18663793/1‑68 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:41747982/1‑68 (MQ=255) gACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:32741363/1‑66 (MQ=255) aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTtc > 1:40020115/1‑67 (MQ=255) aCTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTtc > 1:936321/1‑67 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCg > 1:49952221/1‑68 (MQ=255) tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTGTTTCTCCGTTGc < 1:16212176‑M1/65‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:40296659/1‑68 (MQ=255) GGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCAc < 1:22626518‑M1/67‑1 (MQ=255) | AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCAC > CP009273/3920711‑3920844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |