| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 689 (0.980) | 81 (0.150) | 19/88 | NT | 14.1% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 443 (0.810) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 1216 total aligned reads displayed.
ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 | gcaacggagaaagaccgtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGa < 1:30997879‑M2/3‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAACGCCCTTCGCCC‑CGa < 1:2561410/67‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGccc‑c < 1:55354039/65‑1 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:724697/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:6833723/1‑68 (MQ=255) ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGAt > 1:51697811/1‑68 (MQ=255) aacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGAt < 1:37943894‑M2/4‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:36993085/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:9488765/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:41779367/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:38340869/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:3050307/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:29942824/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:25911109/1‑68 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGAcc > 1:10923671/1‑68 (MQ=255) gCAACACGACTGCAGCGCGGGCGAAGGGCTGAACACGCACATGAAAGCCCTTCGCCCGCGCTGAAgt < 1:10077683/67‑2 (MQ=37) aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGt < 1:32038030/68‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTc < 1:23288398/68‑1 (MQ=255) acggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt < 1:34336899‑M1/55‑1 (MQ=255) acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt < 1:20375628/68‑1 (MQ=255) gACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCtt > 1:32741363/1‑66 (MQ=255) cTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTtct < 1:54120095/67‑1 (MQ=255) ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTcc < 1:13616622/68‑1 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACCCGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGGCGTTCTCCg > 1:14288322/1‑68 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCg > 1:50210990/1‑68 (MQ=255) tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCGCCg > 1:48914667/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGCCCGTCTTTCTCCGTTGc > 1:53822405/1‑68 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGc > 1:23877529/1‑68 (MQ=255) GGCGAAGGGCTGTTCACGCACATGAAAGCCCTTCGCCC‑CGATGAAGGCCGTCTTTCTCCGTTGCACTc < 1:18794726‑M1/68‑1 (MQ=255) GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:43945017‑M1/68‑1 (MQ=255) GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:19168157‑M1/68‑1 (MQ=255) ctaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg < 1:35985681‑M2/32‑1 (MQ=255) cacGGGCTTTACACGCAAATTAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:20815476‑M1/4‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:27926784‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:56104123‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:34751529‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:21358348‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:830714‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:19993672‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:1720012‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:1495285‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:38920054‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:53089430‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:57478154‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:42320638‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:2825377‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCgg > 1:27424579‑M1/1‑67 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGt > 1:45943599‑M1/1‑68 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCCTTCTCCGTTGCACTCgg > 1:17999767‑M1/1‑67 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:43249072‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:29177983‑M1/68‑1 (MQ=255) GGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:52702001‑M1/68‑1 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:33326706‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:57008212‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:39576743‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:43054051‑M1/1‑67 (MQ=255) GCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 1:57903073‑M1/1‑67 (MQ=255) gctttcatgtgcgggtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:31686075‑M2/37‑1 (MQ=255) gcttacatgtgcgtgaacaccccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt < 1:44937636‑M2/37‑1 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTgc > 1:17528832/1‑66 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:41359836/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:18314394/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:48421825/1‑67 (MQ=255) acacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:3760167/1‑67 (MQ=255) cacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc > 1:12551187/1‑68 (MQ=255) cacGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc > 1:44608801/1‑68 (MQ=255) acGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa < 1:26801697/68‑1 (MQ=255) cGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTACGTTGCACTCGGTCTATGTTGACCAg > 1:45470141/1‑68 (MQ=255) gCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt < 1:36428525/68‑1 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:24480904/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:51117913/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:47473366/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:47183222/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:40961555/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:6239563/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:11334754/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:15558840/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:28792015/1‑68 (MQ=255) cacaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg > 1:16377763/1‑68 (MQ=255) acaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTgg < 1:52144703/68‑1 (MQ=255) acaTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg < 1:12015363/67‑1 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCa > 1:46991390/1‑45 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg < 1:4004433/68‑1 (MQ=255) caTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg < 1:22527836/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:40677058/68‑1 (MQ=255) aTGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa < 1:768352/68‑1 (MQ=255) tGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg > 1:46376172/1‑66 (MQ=255) gAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg > 1:16114804/1‑65 (MQ=255) aaGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg > 1:53544549/1‑68 (MQ=255) aaGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg < 1:49645481/68‑1 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:13217035‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:33942497‑M2/12‑68 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:8889543‑M2/12‑68 (MQ=255) cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg < 1:4930848‑M2/60‑1 (MQ=255) cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg < 1:43567179‑M2/60‑1 (MQ=255) cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg < 1:35469242‑M2/60‑1 (MQ=255) tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 1:54583847‑M2/62‑1 (MQ=255) tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 1:2203859‑M2/62‑1 (MQ=255) cCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATg > 1:10523066‑M2/2‑68 (MQ=255) cGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATgg < 1:25004159/68‑1 (MQ=255) | ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCC‑CGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG > CP009273/3920752‑3920884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |