| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4156417 = | NA (NA) | 15 (0.020) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
Only 100 of 1017 total aligned reads displayed.
GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > CP009273/4197864‑4197986 | gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:29730903/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:26568249/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:25449093/68‑1 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct < 1:54889641/68‑1 (MQ=255) aaGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa < 1:33835287/68‑1 (MQ=255) aaGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa > 1:55705391/1‑68 (MQ=255) aaGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa < 1:15664007/68‑1 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:21600290/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:31843839/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:28577703/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:51401083/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:1421451/1‑68 (MQ=255) agGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAtt > 1:57183142/1‑68 (MQ=255) ggAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAt < 1:28080918/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:12960708/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:5093584/66‑1 (MQ=255) gCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAg > 1:46822448/1‑68 (MQ=255) cGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGGTCTTTAACAATTTATCAg > 1:7822807/1‑67 (MQ=255) gTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGAc > 1:45302525/1‑68 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:41951107/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:3124871/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:2438254/67‑1 (MQ=255) atatACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:247617/68‑1 (MQ=255) atatACGCCACCTCGCGAAAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:16731737/68‑1 (MQ=255) tataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:11028674/1‑66 (MQ=255) ataCGCCACCTCTCGCCAGTGCGCTAAAGCGCGTCGCACCTGCTCTTTAACAATTTATCAGACaa > 1:32754555/1‑65 (MQ=17) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAGCAATTTATCAGAGaa > 1:52832193/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:7493718/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:39989517/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:8240902/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:30432265/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:916929/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:55375331/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:16227168/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:4928118/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:6475504/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:8765394/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:14860838/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:57715870/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:56822646/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCt < 1:44893633/68‑1 (MQ=255) taCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:51647119/1‑64 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:27408730/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:35082781/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:36130857/68‑1 (MQ=255) cGCCACCTCGCGACAGTTCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:35627824/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:3093097/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:40344567/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:37812031/68‑1 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:37281917/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:10113601/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:17286216/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:6800920/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:21252203/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:22471404/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:34533614/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCATCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:33241397/1‑68 (MQ=255) aCCTCGCGGCAGTGCGCTAAAGCGCGTCGCAACTGCTCTGTAACAATTTATCAGACAATCTGTGTgg > 1:54444190/1‑67 (MQ=17) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:38320155/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:18155783/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:12188891/1‑67 (MQ=255) tCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc > 1:46450249/1‑66 (MQ=255) cgcgACAGTGCGNTAAAGCGCGTCGCAANTGNTCTTTAACANTTTATCAGACAATCTGTGTGGGCACt < 1:10542899/68‑1 (MQ=17) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:29538387/68‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:52242791/68‑1 (MQ=255) gACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCg < 1:43619514/67‑1 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGat > 1:19316573/1‑67 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:11726821/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:19756453/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:29101443/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:38991386/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:4715733/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:42556262/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:41498936/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGCGGGCACTCGaa > 1:56437101/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:20537425/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:56073813/1‑68 (MQ=255) gTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAt > 1:40727104/1‑68 (MQ=255) gcgcTAAATCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:3143873/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:18784682/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:22044368/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:23762133/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATa < 1:22949046/67‑1 (MQ=255) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACACTCTGTGGGGGCACTCGAAGATACGGAt < 1:47767061/68‑1 (MQ=255) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt < 1:18429679/68‑1 (MQ=39) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGCCAATCTGTGTGGGCACTCGAAGATACGGAt > 1:3660437/1‑67 (MQ=255) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:2589319/1‑67 (MQ=37) aaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTc < 1:48931616/68‑1 (MQ=35) aaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTc < 1:43197450/68‑1 (MQ=35) aGCGCGTCGCAACTGCTCTTTAACATTGTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:53633558/1‑68 (MQ=255) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt < 1:45732180/68‑1 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:32138174/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:34312820/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:36862235/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:50199976/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:5995404/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:39390671/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:44283250/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:13459829/1‑68 (MQ=33) aGCGCGTCGCAACTGCCCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:48275015/1‑68 (MQ=18) | GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > CP009273/4197864‑4197986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |