New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4603949 =490 (0.700)5 (0.010) 4/94 NT 1.3% coding (652/780 nt) yjjV putative DNase
?CP009273 4603980 = 342 (0.580)coding (683/780 nt) yjjV putative DNase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 815 total aligned reads displayed.

ACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAAT  >  CP009273/4603913‑4604047
                                                                   |                                                                   
aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg                                                                     >  1:11607327/1‑68 (MQ=255)
aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg                                                                     >  1:42928948/1‑68 (MQ=255)
 ttcccggcgcaactcgcaaagcacggcgaacacacgggcagcctgctccgggcggttaggctgcccg                                                                     <  1:27153346‑M2/1‑1 (MQ=255)
   gccgcgCCTGATATGCCGCTCAACCGGATTCAGGGGCCGCCTAACCCCCCGGAGCAGGCTGCCCgtgt                                                                  <  1:52091113/66‑1 (MQ=255)
     cgcgCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgtgt                                                                >  1:54100223/1‑68 (MQ=255)
     cgcgCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGACTAAGCGCCCGGAGCAGGCTGCCCgagtgt                                                                >  1:26648635/1‑68 (MQ=255)
        gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTc                                                              <  1:6299339/67‑1 (MQ=255)
        gcCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTc                                                              <  1:46062918/67‑1 (MQ=255)
              tatGCGGGTCAACGGTTTTCAGGGGCAGGCAAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc                                                       <  1:30744763/68‑1 (MQ=255)
              tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc                                                       <  1:47211841/68‑1 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     >  1:256390/1‑68 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     <  1:23522646/68‑1 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     <  1:40300950/68‑1 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     >  1:53181702/1‑68 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     >  1:53772164/1‑68 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     <  1:6723219/68‑1 (MQ=255)
                tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt                                                     >  1:6102776/1‑68 (MQ=255)
                  ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt                                                    >  1:10695042/1‑67 (MQ=255)
                  ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt                                                    >  1:19020171/1‑67 (MQ=255)
                  ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt                                                    >  1:7645889/1‑67 (MQ=255)
                  ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt                                                    >  1:35524329/1‑67 (MQ=255)
                   cGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTg                                                   <  1:5558017/67‑1 (MQ=255)
                   cGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGc                                                  >  1:35006928/1‑68 (MQ=255)
                    gCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCg                                                 >  1:28484872/1‑68 (MQ=255)
                     gcacggcgaccacacGGGCCGCCTTTCCGCCCGGAGCAGGCTGCCCGTGGGTTCGCCCTGCTTTGcgc                                                <  1:32270539‑M1/53‑2 (MQ=255)
                      tCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAg                                               >  1:17373790/1‑68 (MQ=255)
                      tCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAg                                               >  1:39850225/1‑68 (MQ=255)
                                  aGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGa                                    >  1:39468283/1‑67 (MQ=255)
                                   ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa                                   >  1:41967284/1‑67 (MQ=255)
                                   ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa                                   >  1:9357499/1‑67 (MQ=255)
                                   ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa                                   >  1:1686319/1‑67 (MQ=255)
                                   ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa                                   >  1:11863733/1‑67 (MQ=255)
                                   ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGAGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa                                   >  1:8030125/1‑67 (MQ=255)
                                     GGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg                                <  1:3189808‑M1/68‑1 (MQ=255)
                                     GGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg                                <  1:22911412‑M1/68‑1 (MQ=255)
                                        AGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcg                             <  1:38185063‑M1/68‑1 (MQ=255)
                                         GCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg                            >  1:28124599‑M1/1‑68 (MQ=255)
                                           CTACCCGCCCGGAGCAGGCTGCCCGTGTGTGCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg                            >  1:10002373‑M1/1‑66 (MQ=255)
                                           CTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg                            >  1:30317170‑M1/1‑66 (MQ=255)
                                           CTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGAt                          <  1:20418453‑M1/68‑1 (MQ=255)
                                           CTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGAt                          <  1:21539680‑M1/68‑1 (MQ=255)
                                              aCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgag                       <  1:32706461/68‑1 (MQ=255)
                                              aCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgag                       <  1:12614937/68‑1 (MQ=255)
                                              aCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgag                       >  1:24008755/1‑68 (MQ=255)
                                              aCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgag                       >  1:36683602/1‑68 (MQ=255)
                                              aCCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgag                       >  1:1469617/1‑68 (MQ=255)
                                               ccGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATgaga                      <  1:25172507/68‑1 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:51056936/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:51911283/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:15688547/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:38724615/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:50905575/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:47584053/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:57087290/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:44721325/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:277820/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:11175770/1‑68 (MQ=255)
                                                cGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGAt                     >  1:45471725/1‑68 (MQ=255)
                                                   ccGGCGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGACCCGGCGGATGAGATTgc                  <  1:7340051/68‑1 (MQ=255)
                                                   ccGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTgc                  >  1:37404104/1‑68 (MQ=255)
                                                   ccGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTgc                  <  1:52749794/68‑1 (MQ=255)
                                                   ccGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTgc                  <  1:34092002/68‑1 (MQ=255)
                                                   ccGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTgc                  <  1:7002511/68‑1 (MQ=255)
                                                    cGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTgcg                 <  1:1825306/68‑1 (MQ=255)
                                                        ggaggctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCaa              <  1:13525835‑M2/56‑1 (MQ=255)
                                                        gCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCaa              >  1:49515409/1‑67 (MQ=255)
                                                        gCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCaa              >  1:43731039/1‑67 (MQ=255)
                                                         cAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGc            >  1:21947281/1‑68 (MQ=255)
                                                          aggctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAg             <  1:44372573‑M2/57‑1 (MQ=255)
                                                          aggctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAg             <  1:35945086‑M2/57‑1 (MQ=255)
                                                          aggctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGc            <  1:21128739‑M2/58‑1 (MQ=255)
                                                          aggcggcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGTAACCGGCGGATGAGATTGCGCAAGc            <  1:22233623‑M2/58‑1 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         >  1:46985367‑M2/7‑67 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         <  1:24354256‑M2/61‑1 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         <  1:33202892‑M2/61‑1 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         >  1:13929032‑M2/7‑67 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         >  1:15177221‑M2/7‑67 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         >  1:51415054‑M2/7‑67 (MQ=255)
                                                             ctgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGtt         <  1:40617755‑M2/61‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:35176882‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:26130183‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:8735745‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:28940548‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:15964468‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:31443832‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:56455721‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:48127784‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:42563869‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:502711‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:36305065‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:19935248‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:19466463‑M2/63‑1 (MQ=255)
                                                              tgcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGc       <  1:41418694‑M2/63‑1 (MQ=255)
                                                               gcccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCt      <  1:29452772‑M2/64‑1 (MQ=255)
                                                                cccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCtt     >  1:48524890‑M2/4‑68 (MQ=255)
                                                                 ccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTa    <  1:17864247‑M2/66‑1 (MQ=255)
                                                                 ccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTa    >  1:12254095‑M2/3‑68 (MQ=255)
                                                                 ccGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTa    <  1:46388539‑M2/66‑1 (MQ=255)
                                                                  cGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTaa   >  1:54866723‑M2/2‑68 (MQ=255)
                                                                  cGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTaa   >  1:57476774‑M2/2‑68 (MQ=255)
                                                                   |                                                                   
ACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATGAGATTGCGCAAGCGTTGCTTAAT  >  CP009273/4603913‑4604047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.