| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 537 (0.770) | 3882 (9.140) +CGTTTTTTTGGATGGAGGAATT |
57/68 | NT | 90.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 760 (1.090) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 7864 total aligned reads displayed.
GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509206‑3509339 | ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:10003372‑M2/1‑66 (MQ=255) ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:18525910‑M2/1‑66 (MQ=255) ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:14998714‑M2/1‑66 (MQ=255) ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:25931850‑M2/1‑66 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:36224485/68‑1 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt < 1:46068937‑M2/67‑5 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt < 1:55875389‑M2/67‑5 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTg > 1:37667076/1‑66 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:48707528‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:1150623‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:52081340‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:39195219‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:1711504‑M2/67‑7 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:21264580‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:40199332/1‑67 (MQ=255) cAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaa < 1:22247423‑M2/68‑17 (MQ=255) cAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTATTCTTCATGaattcctccatccaaa < 1:2955722‑M2/68‑17 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaa < 1:4973079‑M2/68‑18 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:38626443‑M2/67‑20 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:12001640‑M2/67‑20 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaa > 1:8869763‑M2/1‑48 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaac < 1:10945361‑M2/68‑22 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaa > 1:25537123‑M2/1‑47 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:43980629/67‑1 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:31618929‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg < 1:23839482‑M2/68‑25 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:33119813‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:33592306‑M2/68‑26 (MQ=255) ttGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggta < 1:12498497‑M2/68‑27 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:39680409‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:57878592‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:13548737/1‑67 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg < 1:50917000‑M2/68‑29 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:5037171‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:27431546‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:56390979‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:30993612‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:32064730‑M2/1‑40 (MQ=255) cccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgg < 1:5309564‑M2/68‑30 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaacacgggtatgga < 1:2070295‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:34117148‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:57378221‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:2499867‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:381897‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:48167270‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:22889090‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCAAGCTGACTAACTAATTACACCTTCTCCGGc > 1:35691974/1‑66 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATATTTCTTCATGaattcctccatccaaaaaaaagggaatgga < 1:23286201‑M2/68‑31 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag < 1:30453214‑M2/68‑32 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:6572302‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:55362255‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:5372440‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtgtg > 1:14007342/1‑68 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:1657545‑M2/1‑35 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:47565552‑M2/1‑35 (MQ=255) tGCCCACT‑CAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:16047408‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:42440551‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:43492209‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:10474615‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:24367340‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggaatggagacac < 1:41418816‑M2/68‑36 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca < 1:44471751‑M2/68‑37 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:36663593‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:6043175‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:51543730‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:1551955‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:14515530‑M2/1‑31 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:52569879‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:28493933‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:34716459‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:12994460‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:4709274‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:30011925‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattccaccatccaaaaaaacgggtatggagaaacagt > 1:45020046‑M2/1‑30 (MQ=255) cTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtag < 1:42962693‑M2/68‑41 (MQ=255) ttCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCt < 1:9484276/68‑1 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:17647593‑M2/1‑25 (MQ=255) aaaaaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagag > 1:37123256‑M2/1‑24 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:27005634‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:7188078‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:41890175‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:19045235‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:54242660‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:54768985‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCATCATGaattcctcaatccaaaaaaacgggtatggagaaacagtagagagtt < 1:1961203‑M2/67‑47 (MQ=255) aaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgc > 1:28044410‑M2/1‑20 (MQ=255) gcgATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgat > 1:45503168‑M2/1‑16 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:40807883‑M2/1‑10 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:21813123‑M2/1‑10 (MQ=255) ttcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcg > 1:32627517‑M2/1‑9 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:20206583‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:49177338‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:46602927‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca < 1:35219704‑M2/68‑63 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:28930672‑M2/1‑5 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:18061953‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:56858595‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:26420303‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:7752522‑M2/1‑4 (MQ=255) tGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcaggta < 1:823526‑M2/68‑67 (MQ=255) | GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509206‑3509339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |