New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 108768 =525 (0.750)36 (0.060) 9/100 NT 7.0% coding (319/744 nt) zapD FtsZ stabilizer
?CP009273 108799 = 484 (0.770)coding (288/744 nt) zapD FtsZ stabilizer

Only 100 of 756 total aligned reads displayed.

AATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGA  >  CP009273/108733‑108866
                                                                  |                                                                   
aaTCAAACGATCTTCCCGCAGAAATTGCACGATACGACGCGCGGAAATTAATACGCTACCCGCCGAtt                                                                    >  1:35891868/1‑68 (MQ=255)
 aTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCttt                                                                   <  1:40347346/68‑1 (MQ=255)
   cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                                                 >  1:11942143/1‑68 (MQ=255)
   cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                                                 >  1:21452798/1‑68 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                                                 >  1:45486017/1‑65 (MQ=255)
      aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              <  1:7653782/68‑1 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgc                                                            <  1:20913949/68‑1 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:44007012/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:27927652/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:34815371/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:35633502/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:43522619/1‑66 (MQ=255)
        gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                                                              >  1:16215821/1‑66 (MQ=255)
          tgaagcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCGCCCCGCCGCGTTTAActgctg                                                          <  1:17652106‑M1/43‑1 (MQ=255)
          tCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTTActgctg                                                          >  1:33512326/1‑68 (MQ=255)
            ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                                                        <  1:29228498/68‑1 (MQ=255)
             agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAAt                                                       <  1:14202567‑M1/46‑1 (MQ=255)
             agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAAt                                                       <  1:30761600‑M1/46‑1 (MQ=255)
                cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                                                    >  1:50837599/1‑68 (MQ=255)
                cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                                                    >  1:47179061/1‑68 (MQ=255)
                cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                                                    >  1:32198303/1‑68 (MQ=255)
                 gCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAAt                                                   >  1:15087299/1‑68 (MQ=255)
                  taattcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATg                                                  <  1:53457667‑M2/20‑1 (MQ=255)
                    attcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCt                                                <  1:36853466‑M2/22‑1 (MQ=255)
                    attcagcagttaaaagcggcggggagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCt                                                <  1:4863278‑M2/22‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGc                                                 <  1:38141212/65‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:57791325/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:35067153/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:7371386/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:9383926/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:8105204/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:22504575/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:19939793/66‑1 (MQ=255)
                      aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                                                <  1:11305173/66‑1 (MQ=255)
                       aTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCa                                             <  1:25659596/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:56989201/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:34105884/68‑1 (MQ=255)
                         tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:56530094/68‑1 (MQ=255)
                         cgCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt                                           <  1:40965522/67‑1 (MQ=255)
                         ccagttaaacgcggcggggagcgtattaaattccgcgccgcATTTAACTGCTGAATTAATGCTTCAAt                                           <  1:24021680‑M2/27‑1 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:20233305/1‑68 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:23008242/1‑68 (MQ=255)
                           cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCGTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:48349837/1‑68 (MQ=255)
                           cccGAAACGCGGCGCTGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc                                         >  1:31309179/1‑68 (MQ=255)
                              taaaagcggcggtgagcgtattaatttccgcgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:39231502‑M2/32‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:36237971/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:5000325/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:44835421/68‑1 (MQ=255)
                              gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc                                      <  1:27188489/68‑1 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 >  1:5922933‑M1/1‑68 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 >  1:12642001‑M1/1‑68 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 <  1:24870241‑M1/68‑1 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 <  1:8371952‑M1/68‑1 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 >  1:13730955‑M1/1‑68 (MQ=255)
                                   GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg                                 >  1:26099022‑M1/1‑68 (MQ=255)
                                     GGCGCGGAAATTAATACGCTCCCCGCCGGTTTTAACTGCTGAATTAATGCTTAAATACGGATCTGGt                                <  1:4583733‑M1/67‑1 (MQ=255)
                                     GGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGt                                >  1:29691031‑M1/1‑67 (MQ=255)
                                     GGCGCGGAAATTAATACGCTCACCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGt                                >  1:51449153‑M1/1‑67 (MQ=255)
                                        GCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCAc                            >  1:38475097‑M1/1‑68 (MQ=255)
                                        GCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCAc                            >  1:42851451‑M1/1‑68 (MQ=255)
                                          ggAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACg                           <  1:28522183/67‑1 (MQ=255)
                                          ggAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACg                           <  1:2883162/67‑1 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       <  1:57440396/68‑1 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       >  1:47563911/1‑68 (MQ=255)
                                             aaTTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAg                       <  1:17428560/68‑1 (MQ=255)
                                               ttAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGc                     >  1:10049649/1‑68 (MQ=255)
                                                 aaTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCAc                   <  1:46661011/68‑1 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCAc                   >  1:18996455/1‑67 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACg                  <  1:49284504/68‑1 (MQ=255)
                                                  aTACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACg                  <  1:19385229/68‑1 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:34355931/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:54717716/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:44523611/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:624422/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:14443534/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:15634853/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:41274199/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:31849966/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:46261787/1‑68 (MQ=255)
                                                    aCGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGcc                >  1:10701577/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:50233525/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:39650214/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:32834591/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:54028698/1‑68 (MQ=255)
                                                      gCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCaa              >  1:18490106/1‑68 (MQ=255)
                                                        tCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAAt             <  1:32574201/67‑1 (MQ=255)
                                                        tCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAAt             <  1:37426459/67‑1 (MQ=255)
                                                        tCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAAt             >  1:3995671/1‑67 (MQ=255)
                                                        tCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAAt             <  1:1695773/67‑1 (MQ=255)
                                                            cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:52640772‑M2/62‑1 (MQ=255)
                                                            cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:42129838‑M2/62‑1 (MQ=255)
                                                            cgccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        <  1:26473325‑M2/62‑1 (MQ=255)
                                                              ccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        >  1:55313153‑M2/5‑66 (MQ=255)
                                                              ccgcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAgg        >  1:5200822‑M2/5‑66 (MQ=255)
                                                                gcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTg    >  1:21891737‑M2/3‑68 (MQ=255)
                                                                gcTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTg    >  1:6683599‑M2/3‑68 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  >  1:55850376/1‑68 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:23644648/68‑1 (MQ=255)
                                                                  ttttAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:1319659/68‑1 (MQ=255)
                                                                  ttttAACTGCTGAATAAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGa  <  1:25100878/68‑1 (MQ=255)
                                                                  |                                                                   
AATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGGTCCACGCCAGGCACGCCAATCCAGGTCTGGA  >  CP009273/108733‑108866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.