| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 772557 = | 193 (0.280) | 7 (0.010) | 5/98 | NT | 5.3% | coding (760/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex |
| ? | CP009273 | 772577 = | 83 (0.140) | coding (780/1266 nt) | tolA | membrane anchored protein in TolA‑TolQ‑TolR complex | |||||
Only 100 of 226 total aligned reads displayed.
GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG > CP009273/772511‑772644 | ggCAGCAGAGAAAGCTGCCCCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg < 1:56501014/68‑1 (MQ=255)ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg < 1:23762592/68‑1 (MQ=255) gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa > 1:11161922/1‑68 (MQ=255) gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa > 1:34121197/1‑68 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCCGCAGCTGa < 1:13840752/67‑1 (MQ=255) cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa < 1:26463501/67‑1 (MQ=255) ttttttgtctgcggcggctttttctgccgctgctttcttatcagctgctgccttttcagcagcTGATa < 1:608281‑M2/5‑1 (MQ=255) agcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGAt < 1:25283374/67‑1 (MQ=255) accagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:54653039/66‑1 (MQ=255) agagAAAGCTGCAGCCTACAAAAAAGAAGCATAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:46369442/65‑1 (MQ=37) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:42098863/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:28327420/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:32403077/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:33858256/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:42543362/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:49562044/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:44256019/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:53162898/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa < 1:44150422/65‑1 (MQ=255) agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg < 1:11721088/67‑1 (MQ=255) agaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa > 1:19871943/1‑68 (MQ=255) agaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa > 1:14721199/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:51973973/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:47188650/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:12813393/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:53389411/1‑68 (MQ=255) aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca > 1:20750415/1‑68 (MQ=255) aaGCGGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCGGATAAGAAagca < 1:5393758/68‑1 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:22147101‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:45360206‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:186734‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:46585666‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:18304749‑M2/10‑68 (MQ=255) gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc > 1:43136757‑M2/10‑68 (MQ=255) ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAaagcagcc > 1:6824225‑M2/9‑67 (MQ=255) ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg > 1:45879749‑M2/9‑68 (MQ=255) ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg > 1:54504106‑M2/9‑68 (MQ=255) ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg > 1:28753906‑M2/9‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:10433503‑M2/7‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:3105540‑M2/7‑68 (MQ=255) gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc > 1:37581720‑M2/7‑68 (MQ=255) agccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg > 1:5100259‑M2/5‑68 (MQ=255) gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGGAGCTGATAAGATAGCAGCGGCAGa > 1:11865413‑M2/4‑68 (MQ=255) gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa > 1:52915497‑M2/4‑68 (MQ=255) ctttttctgccgctgctttcttatcagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGa < 1:54742124‑M2/21‑1 (MQ=255) aCAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaaaaa > 1:14920505/1‑68 (MQ=255) aCAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGaaaaa > 1:17901084/1‑68 (MQ=255) agcagcAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc > 1:27420792/1‑67 (MQ=255) agcagcAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc > 1:17253486/1‑67 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:30279908/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:4361043/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:17669138/1‑68 (MQ=255) gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc > 1:41334864/1‑68 (MQ=255) tttcttatcagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa > 1:50014990‑M2/31‑68 (MQ=255) agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc < 1:56153911/67‑1 (MQ=255) agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc < 1:48902778/67‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa < 1:10040722/65‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa < 1:55555317/65‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa < 1:50256998/65‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa < 1:13175068/65‑1 (MQ=255) aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa < 1:33923483/65‑1 (MQ=255) aGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:9272891/1‑67 (MQ=255) aGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:21463538/1‑67 (MQ=255) cagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:36170586‑M2/23‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa > 1:2445574/1‑65 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:306382/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:15165630/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:58104491/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:45803126/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:50008805/1‑68 (MQ=255) cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg > 1:26616863/1‑68 (MQ=255) gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc > 1:6680704‑M2/21‑68 (MQ=255) gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc > 1:11511545‑M2/21‑68 (MQ=255) TGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggcagcgg > 1:29104516‑M1/1‑68 (MQ=255) TGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggcagcgg > 1:39051972‑M1/1‑68 (MQ=255) ccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAgcggcagcggca > 1:14771077‑M2/14‑68 (MQ=255) aaaaGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAgcggcagcggca > 1:47727494/1‑68 (MQ=255) aaaaGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAgcggcagcggca > 1:12098336/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAATCAGCCGCAGACAAAAAAGCGGCAGCGGCaaa > 1:28568345/1‑67 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:33681351/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:55762599/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:9520170/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:19109103/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:32880978/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:30072339/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:24177150/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:25597378/1‑68 (MQ=255) aGGCAGCAGCTGATAAGAAAGCAGAGGCAGAAAAAGCCGCCGCAGACAAAAAAGCCGCAGCGGCaaaa > 1:40421126/1‑68 (MQ=25) ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:45101950/1‑67 (MQ=255) ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:8218318/1‑67 (MQ=255) ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa > 1:20513039/1‑67 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGc > 1:32046567‑M2/6‑68 (MQ=255) gcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGc > 1:16331525‑M2/6‑68 (MQ=255) gcagcTGATAAGAAAGCAGAGGCAGAAAAAGCCGCCGCTGCCAAAAAAGCGGCAGCGGCAAAAGCTGc > 1:23009704‑M2/6‑68 (MQ=255) agcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa < 1:27572423‑M2/64‑1 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAACGCGGCAGCGGCAAAAGCTGCa > 1:22596852‑M2/3‑66 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa > 1:48460411‑M2/3‑66 (MQ=255) gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa > 1:13332979‑M2/3‑66 (MQ=255) cTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa > 1:36009539‑M2/2‑65 (MQ=255) tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGc < 1:10194078/66‑1 (MQ=255) | GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG > CP009273/772511‑772644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |