| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092949 = | NA (NA) | 36 (0.060) | 10/100 | NT | 23.7% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 130 (0.190) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
Only 100 of 572 total aligned reads displayed.
CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 | cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:3588579/68‑1 (MQ=40)cGAAAAAAAAGCCCGTACTATCCTACGAGCTCTTCTTTAAAAATGGCGGGGAGGGGGGGATTCGAAcc < 1:50033218/68‑1 (MQ=14)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:41444753‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:39106580‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:55289044‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:29756481‑M2/1‑1 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:15673746/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:17210481/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:4021395/68‑1 (MQ=40) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:53163670‑M2/2‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:17704758‑M2/67‑67 (MQ=255) aagaagacctcgaacgaaagtacgggattttttttcgtatattgcacacaccggggggatgagaagcc < 1:13693182‑M2/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccggggggatgagaagcc > 1:20572503‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc < 1:44194117‑M2/3‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc < 1:39470084‑M2/3‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:57770745‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:45886988‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:46966966‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:34634163‑M2/66‑67 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:14722608‑M2/66‑67 (MQ=255) agaacagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc < 1:53356296‑M2/3‑1 (MQ=255) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCACAccct > 1:46630774/1‑67 (MQ=11) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgtgggtatgataagcaac > 1:43335919‑M2/65‑65 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgataagcccc > 1:46147580‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:42528564‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11138320‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:47547464‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:5099241‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:38268958‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:36382081‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:53837267‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:35193249‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:6680685‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:32578592‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:30484800‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:8859585‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2886190‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24012786‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:28378604‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:22227707‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:12485607‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:26263285‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:1404270‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:21593004‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:29579505‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:16694017‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:19043977‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:20226704‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc > 1:24210682‑M2/65‑66 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggaggagcagcccc > 1:6181980‑M2/65‑68 (MQ=255) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:52464798/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:15159227/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:54621153/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:913720/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:2107671/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGCCGGTGAGGGGGGGATTCGAAccccc < 1:23496038/68‑1 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:49516104‑M2/64‑67 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:31804087‑M2/64‑68 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:7660490‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:37018047‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:33681449‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa < 1:38769753‑M2/6‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccgggggcatgagaagCCCCg > 1:48569510‑M2/63‑67 (MQ=255) agctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCcccgccc > 1:33181677‑M2/61‑65 (MQ=255) gctcgtacgtaagtacgggcgtttttttcgtatatcgcacacaccggggggatgagaagCCCCGAt < 1:56350977‑M2/7‑1 (MQ=255) ctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa < 1:58109738‑M2/6‑1 (MQ=255) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:5431478/1‑68 (MQ=40) tcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATAc < 1:44809663‑M2/9‑1 (MQ=255) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:55149976/1‑68 (MQ=39) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:18252813/1‑68 (MQ=39) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:26621458/67‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:2997887/66‑1 (MQ=37) cGTAGTTTCGTACGAGCTCTTCATTAAATATGGCGGTGAGGGGGGGATTCGAACGCCCGATACGTTGc < 1:20027575/68‑1 (MQ=11) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGGGGGATTCGAACCCCCGATACGTTGc < 1:42334836/68‑1 (MQ=25) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:40727595/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:57232198/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:31082231/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:32808942/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:36621781/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:22867308/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:15965513/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:10210413/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:34100943/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:41999089/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:49145632/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:47905602/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:26959187/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:45170992/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:27611456/68‑1 (MQ=25) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:8444862/68‑1 (MQ=25) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:1318404‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:27962046‑M2/14‑1 (MQ=255) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:21838873‑M2/14‑1 (MQ=255) acgaaagaacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:12162976‑M2/14‑1 (MQ=255) accaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:5189084‑M2/14‑1 (MQ=255) gaaagaacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGCCGt < 1:25653269‑M2/17‑1 (MQ=255) ggtcttttttttctaaaatcgcacccaccggggggatgagaagCCCCGATACGTTGCCGTATacacac < 1:35616640‑M2/25‑1 (MQ=255) attgcccacaccggggggatgacaagCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCt < 1:9532674‑M2/42‑1 (MQ=255) ccggggggatgagaagCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc < 1:11741016‑M2/52‑1 (MQ=255) gaagCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCAcc > 1:50613599‑M2/5‑68 (MQ=255) | CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |