| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1685627 = | 349 (0.500) | 22 (0.040) | 11/88 | NT | 7.4% | intergenic (+10/+216) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein |
| ? | CP009273 | 1685659 = | NA (NA) | intergenic (+42/+184) | ydgA/uidC | DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein | |||||
Only 100 of 546 total aligned reads displayed.
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT > CP009273/1685592‑1685726 | cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc > 1:25723529/1‑68 (MQ=255) tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:57202353/1‑68 (MQ=255) tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa > 1:46668005/1‑68 (MQ=255) aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc < 1:28486328/67‑1 (MQ=255) ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaa < 1:49878590/68‑1 (MQ=255) aggcaatctctgggttcttttcacagcaaaacgccggagtgaaaattctccggcgttttCATCTGaa < 1:39842844‑M2/8‑1 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa < 1:40544612/67‑1 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa > 1:370962/1‑67 (MQ=255) cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa > 1:48454782/1‑67 (MQ=255) gcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTGATCTGAaaac < 1:7810989‑M1/43‑1 (MQ=255) aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca > 1:4945526/1‑68 (MQ=255) ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa < 1:51137179/68‑1 (MQ=255) atctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaacaaa < 1:6592212‑M2/14‑1 (MQ=255) atctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa < 1:22640622‑M1/45‑1 (MQ=255) tctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaacaaac < 1:21256574‑M2/15‑1 (MQ=255) tctctggtttgttttcagatgAAAACGCCGGAGAATTTTGACTCCGGCGTTTTCATCTGAaatcaaa < 1:22109869‑M1/46‑1 (MQ=255) ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa > 1:1720268/1‑67 (MQ=255) agTAATTCACGGCCAATACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAAGAAACCaga < 1:42159989/65‑1 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga < 1:34924670/65‑1 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga < 1:32799311/65‑1 (MQ=255) agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt > 1:3370740/1‑68 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt < 1:33473238/65‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt < 1:12811617/65‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:20998546/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:56680652/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg < 1:24237867/67‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:54118467/68‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:53307062/68‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:57768301/68‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:47408861/68‑1 (MQ=255) aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc < 1:48936054/68‑1 (MQ=255) aTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGcc < 1:50567071/68‑1 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:38307457/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:26298220/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg > 1:58079622/1‑65 (MQ=255) ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt < 1:47038449/68‑1 (MQ=255) tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTGTCATCTGAAAACAACCCAGAGATTGCCTg > 1:35313785/1‑68 (MQ=255) aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt > 1:29181210/1‑68 (MQ=255) ggCCAAAACGCCGGTGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:24838974/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:30755370/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:44519939/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:24525490/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:6229877/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:35918558/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:5384869/68‑1 (MQ=255) ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc < 1:7523034/68‑1 (MQ=255) ccAAAACGCCGGAGAATTTTCACTCCGGGGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg < 1:1834904/67‑1 (MQ=255) AAACGCCGGTTAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACGAGAGATTGCCTGATGCGCTAc > 1:44152905‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:52022711‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:41013755‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:41607173‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:44847799‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:47910291‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:29564116‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:17993475‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:19314295‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:20393134‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:14315037‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:28307919‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:11762023‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:32226506‑M1/1‑68 (MQ=255) AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc > 1:55860107‑M1/1‑68 (MQ=255) AACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACg > 1:45385877‑M1/1‑68 (MQ=255) CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt < 1:8664227‑M1/68‑1 (MQ=255) CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt < 1:27445434‑M1/68‑1 (MQ=255) CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt > 1:1006149‑M1/1‑68 (MQ=255) CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCCACGCt > 1:37925003‑M1/1‑68 (MQ=255) CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:46174827‑M1/1‑67 (MQ=255) CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:9434106‑M1/1‑67 (MQ=255) CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:52754919‑M1/1‑67 (MQ=255) CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:17486603‑M1/1‑67 (MQ=255) CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:31659523‑M1/1‑67 (MQ=255) CGGAGAATTTTAACTCCGGAGTCTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa > 1:53515625‑M1/1‑67 (MQ=255) AGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa > 1:30048497‑M1/1‑67 (MQ=255) AGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCa > 1:43088532‑M1/1‑67 (MQ=255) GAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg > 1:23520071‑M1/1‑67 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:696674/66‑1 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:39149982/66‑1 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:5160170/66‑1 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:34030587/66‑1 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:41416055/66‑1 (MQ=255) aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg < 1:39646274/66‑1 (MQ=255) ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGTCCTAc < 1:56219264/68‑1 (MQ=255) ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:27875261/68‑1 (MQ=255) ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:36522619/68‑1 (MQ=255) ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:10618976/68‑1 (MQ=255) cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt > 1:21699313/1‑68 (MQ=255) cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt > 1:13630026/1‑68 (MQ=255) aCTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGGTACGCTTATCAGGCCTACCtt < 1:8297520/68‑1 (MQ=255) ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc < 1:26855289‑M2/58‑1 (MQ=255) ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt < 1:54280746‑M2/60‑1 (MQ=255) ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt < 1:41761577‑M2/60‑1 (MQ=255) ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt < 1:1662199‑M2/60‑1 (MQ=255) ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt < 1:15098001‑M2/60‑1 (MQ=255) gttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCa > 1:10999215‑M2/6‑68 (MQ=255) tttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAac > 1:23218829‑M2/4‑68 (MQ=255) tCATCTGAAAACAACCCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAac > 1:15758048‑M2/2‑66 (MQ=255) tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac < 1:43545526‑M2/67‑1 (MQ=255) tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac < 1:54926056‑M2/67‑1 (MQ=255) cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt < 1:57458644/68‑1 (MQ=255) | CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT > CP009273/1685592‑1685726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |