| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2279605 = | 644 (0.920) | 28 (0.050) | 11/86 | NT | 6.1% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 365 (0.680) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
Only 100 of 874 total aligned reads displayed.
TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 | tATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaaa > 1:48701268/1‑68 (MQ=255) aTTGCAAGTGCTGACAGCCGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat > 1:6939275/1‑68 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:10537102/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:44284601/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:20556870/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat > 1:25636945/1‑68 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:26457118/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:13200587/68‑1 (MQ=255) ttGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAata < 1:54180560/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAata > 1:38103775/1‑67 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:54994435/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:6615879/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:38301759/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:51850073/68‑1 (MQ=255) tttccacaccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATc < 1:6266766‑M2/6‑1 (MQ=255) aaGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt < 1:46671554/67‑1 (MQ=255) aGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCtt > 1:41670628/1‑67 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTAc < 1:11612796/66‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:15842189/1‑68 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:35326474/67‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt < 1:31808870/67‑1 (MQ=255) cTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:54654536/68‑1 (MQ=255) accgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGc < 1:40202991‑M1/47‑1 (MQ=255) accgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGc < 1:23239752‑M1/47‑1 (MQ=255) ccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCa < 1:27683288‑M2/15‑1 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:31338588/1‑67 (MQ=255) gcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgt < 1:4475378‑M2/21‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCgg < 1:52233687/67‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCgg < 1:30145056/67‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:23603195/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:53394106/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:7413613/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:28810062/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:8167641/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:34171787/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:8810828/68‑1 (MQ=255) gagaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtg > 1:50605570/1‑68 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:51426670/67‑1 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:18473024/67‑1 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:7653831/67‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa > 1:37243477/1‑68 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa > 1:17498608/1‑68 (MQ=255) cGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaa > 1:15066149/1‑68 (MQ=255) gatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaa < 1:57647945‑M1/61‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCATTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:40518118/68‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:55829334/68‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:43886223/68‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATATTACTTGCAATCGGTGTGGAAAACg < 1:11089446/68‑1 (MQ=255) ttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg < 1:42561337/68‑1 (MQ=255) ttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg < 1:49634206/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:24652305/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:29294929/68‑1 (MQ=255) tATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgt < 1:4616773/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:9451063/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:847587/68‑1 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag < 1:45304011‑M1/68‑1 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:58033250‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:22606975‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:52526133‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:1701499‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:32765643‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:10094262‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:35946556‑M1/1‑68 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt < 1:39142739‑M1/68‑1 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt < 1:51014039‑M1/68‑1 (MQ=255) GCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagta < 1:19653610‑M1/68‑1 (MQ=255) GCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagta < 1:57370565‑M1/68‑1 (MQ=255) AACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa > 1:47420941‑M1/1‑68 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:4111513‑M1/67‑1 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:12200515‑M1/67‑1 (MQ=255) ttaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGa < 1:24300984/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:13913380/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:52988036/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:29666393/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:16334240/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:21259879/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:45646950/1‑68 (MQ=255) aatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCgg < 1:13745219‑M2/55‑1 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:2187017‑M2/13‑68 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:26788103‑M2/13‑68 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc < 1:19105013‑M2/56‑1 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:34658869‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:12688802‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCa < 1:28269739‑M2/57‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:47836189‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:25256112‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:38673909‑M2/58‑1 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:23459395‑M2/10‑68 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:33259619‑M2/10‑68 (MQ=255) agcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAgc < 1:19999207‑M2/63‑1 (MQ=255) cgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAgcgc > 1:23963602‑M2/4‑68 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:32335893‑M2/66‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:50231777/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:56607497/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:30541119/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:14545665/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:43335875/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:4089161/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGGGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:4851448/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGGGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:36686725/68‑1 (MQ=255) | TTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279571‑2279705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |