BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4382210	223 (0.360)	17 (0.030)	10/96	NT	7.5%	noncoding (34/76 nt)	glyV	tRNA‑Gly
*	?	CP009273	= 4382323	230 (0.430)	17 (0.030)	10/96	NT	7.5%	noncoding (35/76 nt)	glyX	tRNA‑Gly

Only 100 of 121 total aligned reads displayed.

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4382137‑4382210

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA  <  CP009273/4382323‑4382257

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACG                                                                           >  1:20229279/1‑68

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACG                                                                           >  1:1034122/1‑68

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACG                                                                           >  1:33749296/1‑68

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACG                                                                           <  1:35961287/68‑1

  tGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:8799012/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          <  1:27861825/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          <  1:32128322/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          <  1:43022400/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          <  1:46472920/67‑1

  AGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          >  1:43302058/1‑67

   GAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          >  1:29921060/1‑66

     AATGCGAAAATTACGCGAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:47762445/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGTTAGAGCACGAC                                                                         <  1:25132803/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      >  1:28884811/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      >  1:22391868/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      <  1:46837639/68‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      >  1:23801708/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      <  1:28167274/68‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      >  1:34841449/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTT                                                                      >  1:11100457/1‑68

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACC                                                                        <  1:29568497/66‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:28710554/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:31189148/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:26100071/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:33251516/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:38228419/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:34736265/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:36160554/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:10198323/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:42803460/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:43078944/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:43723109/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:45420477/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:46193493/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:49736408/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:6115279/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:803056/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:8345771/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:9230444/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:14372853/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:12238584/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:1817513/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:22520546/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:23524475/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:23621808/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:24046491/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:25309155/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:24401980/65‑1

     AATGCGAAAATTACGAAAGCAAAATTAAGCAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGAC                                                                         <  1:20339404/65‑1

      attCGAAAATTACGAAACCAAAATTAAGTAGTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:9003239/65‑1

      ATGCGAAAATTACGCAACCAAAAATAACTAGAACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:37329687/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:45693643/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:25919419/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:42481922/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:46949671/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:40625056/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:50777840/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:5689304/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:36162503/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:17189151/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:18240120/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:19387107/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:20095924/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:6494110/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:684991/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:11947134/68‑1

      ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     <  1:27654395/68‑1

       TGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTCGAGCACGACCTTG                                                                     >  1:15569019/1‑67

       TGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     >  1:10953240/1‑67

       TGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG                                                                     >  1:43701341/1‑67

              ATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGA                                                                          >  1:40591978/1‑55

                      AGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTA                                                     <  1:22365538/68‑1

                         AAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCA                                                  <  1:10149389/68‑1

                                         CGGGAATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGC                                  >  1:16595231/1‑68

                                              ATAGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGG                             >  1:2177443/1‑68

                                                AGCTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTG                           >  1:17633565/1‑68

                                                  CTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG                          >  1:26807511/1‑67

                                                  CTCAGTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGG                          >  1:30448107/1‑67

                                                      GTTGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGT                     >  1:31045473/1‑68

                                                        TGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCCACTGAGCTATTCCCGCTTGGGTGGTCTGT                     >  1:1732467/1‑66

                                                        TGGTAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGg                   >  1:23974464/1‑67

                                                           TAGAGCACGCCCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGGTTT                >  1:40876976/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT                >  1:16809182/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT                >  1:17968205/1‑68

                                                           TAGAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTT                >  1:18029252/1‑68

                                                             GAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGGTTTGC              >  1:44157887/1‑68

                                                             GAGCACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGC              >  1:14354161/1‑68

                                                                 ACGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGC           >  1:8803139/1‑67

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACT        <  1:45738855/68‑1

                                                                   GACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGATTTGCAGCACT        >  1:39983390/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT      >  1:50733609/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT      >  1:4689947/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTT      >  1:44635855/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTT       <  1:46798585/67‑1

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGAAGCACTTT      >  1:21134788/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGGAGCACTTT      >  1:1359297/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCTGTGCTTTGCAGCACTTT      >  1:18158745/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGTGGGTGGTCAGTTGCTTGGAGCACTTT      >  1:11893025/1‑68

                                                                     CCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCGGGGGGGGTCTGTGCTTTGAAGCACTTT      >  1:8031481/1‑68

                                                                         GGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA  >  1:14230989/1‑68

GCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4382137‑4382210

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccttgGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGCTTGGGTGGTCTGTGCTTTGCAGCACTTTTCAA  <  CP009273/4382323‑4382257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.