| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 223 (0.360) | 17 (0.030) | 10/96 | NT | 7.5% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382323 | 230 (0.430) | noncoding (35/76 nt) | glyX | tRNA‑Gly | |||||
Only 100 of 429 total aligned reads displayed.
ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC > CP009273/4382143‑4382275 | attcgaaAATTACGAAACCAAAATTAAGTAGTAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:9003239‑M1/65‑1 (MQ=255)aTGCGAAAATTACGCAACCAAAAATAACTAGAACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:37329687‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:18240120‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:25147266‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:36162503‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:5689304‑M1/68‑1 (MQ=255) tGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG > 1:43701341‑M1/1‑67 (MQ=255) gAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaa < 1:23659857‑M2/68‑4 (MQ=255) aaaTTTCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:36138817‑M2/1‑63 (MQ=255) aaaTTACGAAAGCGAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaag > 1:38561658‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:34828564‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:32850565‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:21202231‑M2/1‑63 (MQ=255) tACGAAAGCAAAATTAAGTTGTACGCGGGAAAAGCTCAGTTGGTAGTGCACGACCTTGCCAAGGtggt < 1:28019611/68‑4 (MQ=21) tACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:44583049‑M2/1‑59 (MQ=255) aCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtg > 1:19342324‑M2/1‑58 (MQ=255) aCGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg < 1:33825331/68‑1 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:40032456/68‑1 (MQ=255) aaaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTc > 1:24145289/1‑68 (MQ=255) aaaaTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctacca < 1:10149389‑M1/68‑20 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa < 1:4646423/68‑1 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGATCACGACATTGCCAATGTCCGGGACGCCACTTCGAg > 1:18456663/1‑66 (MQ=14) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:3509805/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:27538695/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:29473610/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:5300803/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:22053447/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:42521835/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:14825031/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAACGTCGGGGTCGCGAGTTCGAg > 1:45804683/1‑66 (MQ=255) tagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:47487906/68‑1 (MQ=40) agtaCGCTGTAATAGCTCAGTTGGTAGAGCTCGACCTTTCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:7716763/67‑1 (MQ=11) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:20784720/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:40752419/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:20009119/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:38419846/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:48129610/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:28553467/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:3110198/67‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:28828623/67‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGgct < 1:18751910/67‑1 (MQ=255) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:6844553/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:6991397/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:20386766/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt < 1:27188700/67‑1 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGt < 1:43576590/67‑1 (MQ=33) ggAATAGCTCAGTTGGTAGAGCACGACCTTGggaaggtcgtgctctaccaactgagctattcccgcgt > 1:8737586‑M1/1‑31 (MQ=255) gTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaatt > 1:1540347‑M1/1‑20 (MQ=255) tGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactactttatttt > 1:25834963‑M1/1‑18 (MQ=255) tGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaatttt > 1:10005536‑M1/1‑18 (MQ=255) tAGAGCACGCCCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtggttt > 1:40876976‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtagtacttaattttggt > 1:45049665‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtacgacttaattttgcg > 1:27717720‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGatag > 1:13685907/1‑65 (MQ=1) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:30295508/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:30729873/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:26089249/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:17000988/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATGTGatag > 1:42220037/1‑65 (MQ=0) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAg > 1:50678551/1‑68 (MQ=33) gagCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtggtttgc > 1:44157887‑M1/1‑13 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:4872270/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:22815997/66‑1 (MQ=35) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:32198031/1‑65 (MQ=35) aCGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagc > 1:14233296‑M1/1‑9 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:35200305/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct > 1:26850459/1‑67 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct > 1:15912337/1‑67 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:175613/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc < 1:13396492/66‑1 (MQ=39) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:40364335/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:977968/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:10840512/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:45529881/68‑1 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaat < 1:31496959‑M1/68‑62 (MQ=255) acattggcaatttcgtgagctaccaactgagctattcccgcgtactacttaattttgctttcgtaat < 1:35840698‑M1/64‑62 (MQ=255) aCCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaatt > 1:11038459‑M1/1‑6 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:48452395/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:11891789/1‑68 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgcgctattcccgcgtactacttaattttgctttcgtaattt > 1:37156475‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgctttgcagcactt < 1:46798585‑M1/67‑63 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtgggtggtctgtgctttggagcacttt > 1:1359297‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:12979037‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:8556890‑M1/1‑5 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGCAAGGTGGTGCaaa > 1:34590538/1‑68 (MQ=11) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa < 1:47187466/67‑1 (MQ=255) cTTGCCAATGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:8310653/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:12269312/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:15102379/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGGAAAGTGCTGCAAAGc < 1:21773496/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:21001809/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:17707363/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:49451768/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:16763321/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:28386232/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:49857244/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:47626131/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:391798/68‑1 (MQ=255) ttGCCAAGGGCGGGGGCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAACTGCTGCAAAGc < 1:50339409/68‑1 (MQ=17) ggcaaggtcgtgctctaccaactgagctattcccgcgtactac < 1:41859586‑M1/43‑43 (MQ=255) | ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGC > CP009273/4382143‑4382275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |