BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4622533 =	1067 (1.720)	3 (0.010)	3/98	NT	0.33%	intergenic (+46/‑44)	slt/trpR	lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding
*	?	CP009273	4622558 =	883 (1.630)	3 (0.010)	3/98	NT	0.33%	intergenic (+71/‑19)	slt/trpR	lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding
Rejected: Frequency below/above cutoff threshold.

Only 100 of 155 total aligned reads displayed.

CGCTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4622606‑4622533

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCAC  >  CP009273/4622558‑4622624

CGCTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCT                                                                           <  1:13013113/68‑1

 GCTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          <  1:25355933/68‑1

 GCTGCTGAATAGGGTGATTGTGGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          <  1:34569635/68‑1

  CTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          >  1:46695725/1‑67

  CTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          >  1:24827150/1‑67

  CTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          >  1:15585461/1‑67

  CTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          >  1:5112105/1‑67

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:44415743/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:44041896/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:37662063/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:48696976/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:15207527/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:30231377/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:12163154/68‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCC                                                                         <  1:12046679/67‑1

   TGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCC                                                                         <  1:32229154/67‑1

   TGCTGAATAGGGTGATTGATGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:5600237/68‑1

   TGCTGAATAGGGAGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCC                                                                        <  1:49858962/68‑1

   TGCGGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCC                                                                         <  1:1392354/67‑1

    GCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCC                                                                       <  1:39013498/68‑1

    GCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCC                                                                       <  1:41509661/68‑1

    GCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCC                                                                       <  1:11686000/68‑1

    GCTGAAAAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCC                                                                       <  1:4657106/68‑1

      gGAATAGGGTGATTGTTGGGCCATAATATGTCGCCCTTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:40367022/67‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:20374823/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:38070025/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:31277356/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:18260108/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:35017132/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:33221680/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG                                                                     <  1:32849280/68‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCC                                                                      <  1:15973168/67‑1

      TGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCC                                                                      <  1:30029586/67‑1

        AATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTC                                                                          <  1:31637989/61‑1

            GGGTGATGGTTGGGCCATAATATGTCGCCATTGTTCGCGGGGGAAGCAAAATGCCTCCCCCGCTAACA                                                               <  1:50244395/68‑1

                    GTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCGCTAACAATGGCGAC                                                       <  1:7088593/68‑1

                      TGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCGCTAACAATGGCGACAT                                                     <  1:28078521/68‑1

                                                                   TCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAG        <  1:36708557/68‑1

                                                                   TCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACA         >  1:22533943/1‑67

                                                                   TCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACA         >  1:14745844/1‑67

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:7487671/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:13525689/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:27516302/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:35592701/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:25973446/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:1724971/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGC       <  1:19849185/68‑1

                                                                    CCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGAAGCGATGGCAGAACAGC       >  1:35392426/1‑68

                                                                     CCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:23615834/1‑68

                                                                     CCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:18186567/1‑68

                                                                     CCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      <  1:12494065/68‑1

                                                                     CCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:12319932/1‑68

                                                                      CCCGGTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:11042340/68‑1

                                                                      CCCGCTGACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:27419979/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACACTCCCCCTAATCAGCAGCGCTGGCAGACCAGCG      >  1:10041222/1‑67

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:45717057/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:18967730/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:43481477/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:27093919/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:593004/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:14205675/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:21274269/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:16633771/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:24037774/68‑1

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:29069758/1‑67

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:45966576/1‑67

                                                                      CCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCG      >  1:32198472/1‑67

                                                                      CCCGCTAACAATGGCGACATATTACGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:27768396/68‑1

                                                                      CCCGATAACAATGTCTACATATTATGGCCCAACAATCAACCTATTCAGCAGCGATGGCAGAACAGCGT     <  1:25502265/68‑1

                                                                       CCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTC    >  1:16037906/1‑68

                                                                       CCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTC    >  1:20028413/1‑68

                                                                       CCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTC    >  1:34497450/1‑68

                                                                        CGCTAACTATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:5366524/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACTATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:18763115/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:16077833/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:49081488/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:41648283/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:14976737/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:17649259/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:6291685/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:17841287/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:13312483/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:10005249/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:8846308/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:44860407/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:43979177/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:42128962/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:40652876/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:39111580/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:21431693/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:38540401/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:25318844/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:36897511/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:35696931/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:26600456/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:3418700/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:28372854/68‑1

                                                                        CGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   <  1:3050048/68‑1

                                                                         GCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCAC  <  1:37598775/68‑1

                                                                         GCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCA   >  1:26014655/1‑67

CGCTGCTGAATAGGGTGATTGTTGGGCCATAATATGTCGCCATTGTTAGCGGGGGAAGCAAAATGCCTCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4622606‑4622533

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCAC  >  CP009273/4622558‑4622624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.