| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4622533 = | 1067 (1.720) | 3 (0.010) | 3/98 | NT | 0.33% | intergenic (+46/‑44) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding |
| ? | CP009273 | 4622558 = | 883 (1.630) | intergenic (+71/‑19) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 1124 total aligned reads displayed.
GCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCACC > CP009273/4622491‑4622625 | gCACGTTTATGATATGCTATCGTACTCTTTAGTGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGc < 1:9409729/68‑1 (MQ=255) cGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa > 1:50708748/1‑67 (MQ=255) ttATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACa < 1:32421658/67‑1 (MQ=255) ttATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACa < 1:29556288/67‑1 (MQ=255) ttATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACa < 1:22298304/67‑1 (MQ=255) aTGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATg < 1:25196045/68‑1 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:32762570/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc < 1:6637982/68‑1 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:45805584/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:14888238/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:39010554/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:16316646/1‑68 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:31777510/1‑67 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:1855212/1‑67 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:41078584/1‑67 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGCCg > 1:17391303/1‑67 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:23126242/68‑1 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:12422295/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat < 1:15761671/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat < 1:33620858/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat > 1:12843556/1‑68 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat > 1:20981649/1‑68 (MQ=255) cTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACata > 1:4977790/1‑68 (MQ=255) tATCGTACTCTTTAGCGAGTACAACCGGTGGAGGCATTTTGCTTCCCGCGCTAACAATGGCGACata < 1:8538495/67‑1 (MQ=255) tATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACata < 1:28729554/67‑1 (MQ=255) ctCGTACTCTTTAGCGATTACAACCGGGGGAGGCATTTTGCTTACCCCGCTAACAATGGCGACAtatt < 1:45224880/67‑1 (MQ=255) tCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtatta > 1:10363177/1‑68 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGCCAtattat > 1:41534109/1‑68 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtattat > 1:19549530/1‑68 (MQ=255) tACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATg > 1:4284372/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:24295007/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:47734727/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:30810988/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:26673958/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:29164827/1‑67 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:40031093/1‑68 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:18933192/1‑68 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:11180485/1‑68 (MQ=255) ttAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaac > 1:48425215/1‑68 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:28172013/68‑1 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:36493757/68‑1 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:8049465/68‑1 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:50155537/68‑1 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:38711667/68‑1 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 1:44653707/1‑67 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 1:1527961/1‑67 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 1:6213054/1‑67 (MQ=255) cGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:43678117/1‑68 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:20504712/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:34604058/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCACAACAATc > 1:20186662/1‑67 (MQ=255) aGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCa > 1:37139331/1‑67 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:2269961/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:13194974/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:16771863/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:39578718/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:21914732/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:5740744/67‑1 (MQ=255) aCAACCGGGGGAGGCATTTTTCTGCCCCGGCTAACAATGCCGACATATTATGGCCCAACAATCACCCt < 1:43252469/68‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt < 1:46376681/68‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt > 1:31977010/1‑68 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt < 1:4675617/68‑1 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt > 1:7205915/1‑67 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt > 1:5406504/1‑67 (MQ=255) CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTca > 1:49401757‑M1/1‑68 (MQ=255) CGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTca < 1:27226728‑M1/68‑1 (MQ=255) GGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagc < 1:11686000‑M1/68‑1 (MQ=255) GGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:48696976‑M1/68‑1 (MQ=255) GGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:30231377‑M1/68‑1 (MQ=255) GGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:44041896‑M1/68‑1 (MQ=255) GGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:37662063‑M1/68‑1 (MQ=255) GGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTccgca < 1:1392354‑M1/67‑1 (MQ=255) GGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:40632396‑M1/67‑1 (MQ=255) GGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagca < 1:12046679‑M1/67‑1 (MQ=255) GAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagcag > 1:24827150‑M1/1‑67 (MQ=255) GAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagcag > 1:5112105‑M1/1‑67 (MQ=255) ggCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGa > 1:47237767/1‑68 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:35798252/67‑1 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:42183464/67‑1 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:27638663/67‑1 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:41732275/67‑1 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:90071/67‑1 (MQ=255) aTTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATg < 1:33080086/67‑1 (MQ=255) ttttGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGc < 1:31394992/68‑1 (MQ=255) ttttGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGc < 1:3497543/68‑1 (MQ=255) tGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGa < 1:14466708/68‑1 (MQ=255) tGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGa < 1:25734534/68‑1 (MQ=255) gCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCCCCCTATTCAGCAGCGATGGCAGa > 1:34060058/1‑67 (MQ=255) gCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGa > 1:23634569/1‑67 (MQ=255) gCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGa > 1:38116346/1‑67 (MQ=255) cccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGc < 1:29953910‑M2/62‑1 (MQ=255) cccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGc < 1:13525689‑M2/62‑1 (MQ=255) cccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGc < 1:7487671‑M2/62‑1 (MQ=255) cccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGAAGCGATGGCAGAACAGc > 1:35392426‑M2/7‑68 (MQ=255) ccccgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCg > 1:18186567‑M2/6‑68 (MQ=255) cgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCa < 1:10005249‑M2/66‑1 (MQ=255) cgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCa < 1:1077659‑M2/66‑1 (MQ=255) cgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCa < 1:21431693‑M2/66‑1 (MQ=255) cgCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCa < 1:17841287‑M2/66‑1 (MQ=255) gCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCa > 1:26014655‑M2/2‑67 (MQ=255) | GCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGCGATGGCAGAACAGCGTCACC > CP009273/4622491‑4622625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |