| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 9 (0.020) | 4/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 196 total aligned reads displayed.
ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173388‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:7789622/1‑68ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:1101278/1‑68ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:47637123/1‑68ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:22380670/1‑68ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:31640243/1‑68 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:1037588/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT < 1:45281287/67‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:13148652/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT < 1:24498375/67‑1 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:35497403/1‑67 CCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGT > 1:29123396/1‑67 cCCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:15762495/67‑1 ACCCGAACGGGAAAAGCACATGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:42082406/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:20343027/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:8446364/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:31259375/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:35908862/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:38495275/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:6834107/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:17986320/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:11821574/68‑1 ACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCG < 1:12363087/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCTTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:48036348/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:35343584/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:4458048/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:32228060/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG > 1:30930656/1‑68 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:30692034/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:44105807/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:44049310/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:28160317/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:27739431/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:49231624/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:25283606/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:23717468/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:37263737/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:6659409/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:67692/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGG < 1:7672259/68‑1 CCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCAAATCTGTTGTTCATGTGCCGG < 1:13822785/68‑1 CCGAACGCTAAAAGCACCTGCGGTTGCGGTTATTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:32168268/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:1062551/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:41119981/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:36240510/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:37812639/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:3931139/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:31196040/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA > 1:45764390/1‑68 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:22988691/68‑1 CCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGA < 1:19167470/68‑1 CGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGAT < 1:26148942/68‑1 CGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGGTCTGGTGCCGGAT > 1:49942423/1‑68 CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAAGAGATTAGAT > 1:48405579/1‑66 CTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGAT > 1:42400344/1‑66 TAGTATCTAATCTGTTGTTCATGTGCCGGATAGTGTATCCGGCCCAAGAACAACAGATTAGATACTAA > 1:5794494/1‑68 GTTGTTCATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCA > 1:31942856/1‑68 ATGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAG > 1:37963490/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:39859643/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:10319498/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG < 1:40075559/68‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:40498838/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:48631335/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG < 1:47035975/68‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:44749576/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:13607579/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:22246543/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:18853833/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:27360522/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:27931531/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG < 1:2930441/68‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:38218708/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGG > 1:14827209/1‑68 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:2299101/66‑1 TGTGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCA < 1:11718559/66‑1 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:19463724/1‑67 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:50072826/1‑67 TGCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:1787959/1‑67 GCCGGATAGTTTATCCGGCACATGAGCAACAGATTAGCTACTAAAGGAAGAACCGCATCCGCAGGTGC > 1:2161626/1‑68 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGC < 1:39597599/68‑1 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTG < 1:33623835/67‑1 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:47259917/1‑66 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:22316490/1‑66 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:26016952/1‑66 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:33253695/1‑66 GCCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGT > 1:50391819/1‑66 CCGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT > 1:16796377/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:29860346/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:25502034/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTT > 1:5218820/1‑68 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:34379367/67‑1 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:26821066/67‑1 CGGATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCT < 1:49888126/67‑1 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:19557618/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:4965006/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:41537479/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:43069155/1‑68 ATAGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTC > 1:42982510/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:48060235/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:12139194/1‑68 AGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC > 1:33894602/1‑68 ACCAACCCGAACGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/173388‑173463‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgtgccggataGTTTATCCGGCACATGAACAACAGATTAGATACTAAAGGAAGAACCGCAACCGCAGGTGCTTTTCGC < CP009273/173466‑173400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |