| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 173463 | NA (NA) | 9 (0.020) | 4/88 | NT | NA | noncoding (8/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 173466 | NA (NA) | noncoding (11/19 nt) | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 644 total aligned reads displayed.
CGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATG > CP009273/173399‑173532 | gAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:22757193‑M2/1‑65 (MQ=255) gAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtat > 1:41537479‑M2/1‑65 (MQ=255) ccagcggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGcaca < 1:36624265/65‑1 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:12206985‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:14827209‑M2/1‑57 (MQ=255) ccTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACtatccggcaca > 1:43109203‑M2/1‑57 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:39949163/68‑1 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:49783903/68‑1 (MQ=255) tgcggttgcggtTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtc < 1:25249896/68‑1 (MQ=255) cggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtct > 1:40776863/1‑67 (MQ=255) ggttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc < 1:31330624/68‑1 (MQ=255) ttgcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACAtcttc > 1:5917386/1‑66 (MQ=255) gcggttCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTtctctc < 1:42781951/68‑1 (MQ=255) ttcttcCTTTAGTGTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCa > 1:49956143/1‑68 (MQ=255) ttcttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCa > 1:20417784/1‑68 (MQ=255) ttcttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCa > 1:44358700/1‑68 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:19322521/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:23319356/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:43689913/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:31921315/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:4612268/68‑1 (MQ=255) ttcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACg < 1:48122142/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:3914534/68‑1 (MQ=255) tcCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGc < 1:6687510/68‑1 (MQ=255) ccTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGcc < 1:27868530/68‑1 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:19762381/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc > 1:37431502/1‑68 (MQ=255) cTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGccc < 1:3049465/68‑1 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:41041467/1‑68 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt < 1:16721419/68‑1 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt < 1:12036917/68‑1 (MQ=255) ttAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:27267344/1‑68 (MQ=255) ttAGTATCTAATCTGTTGATCATGTGCCGGATAAACtatccggcacatgaacaacagattagatacta > 1:10831691‑M2/1‑36 (MQ=255) tAGTATCTAATCTGTTGTTCTTGTTCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:1787534/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:38081871/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:37712387/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:33961641/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:35414127/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:45665614/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:30004205/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:21762997/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:23527147/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:18058611/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:16233428/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:22117960/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:25690500/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:13459476/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:2106465/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:18855024/68‑1 (MQ=255) tAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATATTCTCTCTTCAACGCCCAt > 1:2237428/1‑67 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:47311251/1‑66 (MQ=255) aGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAt > 1:44019402/1‑66 (MQ=255) aGTATCTAATCTGTTGTTAATGTGCCGGATAAACTATCCGGCACAACTTCTCTCTTCAACGCCCAt > 1:49520680/1‑66 (MQ=255) tATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtctc > 1:5433669/1‑68 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATtct < 1:2760992/66‑1 (MQ=255) aTCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCa > 1:32354826/1‑68 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCACCGCCCATTCTCATCCa > 1:40197787/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:3588367/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:38745937/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:34619272/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:13972223/1‑67 (MQ=255) aTCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCa > 1:50530958/1‑67 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:39487442/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:33076280/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc < 1:42542853/68‑1 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:42272230/1‑68 (MQ=255) tCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:8467706/1‑68 (MQ=255) cTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgc > 1:44757275/1‑67 (MQ=255) tgttgtTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCAtt < 1:9429636/56‑1 (MQ=255) tgttgtTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAgcgc > 1:8901448/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCCTCCAGCGCa > 1:45269715/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:23884020/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:51233183/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:26268061/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:10111392/1‑68 (MQ=255) gttgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCa > 1:46765865/1‑68 (MQ=255) tgttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCaaa < 1:15675565/68‑1 (MQ=255) ttCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:28382967/1‑68 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:48438584/1‑67 (MQ=255) tCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACg > 1:17561875/1‑67 (MQ=255) aTGTGCCGGATAAACTATCCGGCACCTCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGGCg > 1:47912184/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:21482297/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:37022952/1‑68 (MQ=255) aTGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCg > 1:1151360/1‑68 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCCTCCAGCGCAAACGTCGGTa > 1:34833764/1‑68 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:24911475/1‑68 (MQ=255) tgCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa > 1:29341951/1‑68 (MQ=255) gCCTGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:14130727/68‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa < 1:26862833/67‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa < 1:28965817/67‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTa < 1:6896330/67‑1 (MQ=255) gCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAg < 1:7728416/68‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:24390688/67‑1 (MQ=255) cGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGc < 1:48968990/67‑1 (MQ=255) aTAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTa < 1:13049022/67‑1 (MQ=255) aCTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGAt > 1:9177350/1‑67 (MQ=255) cTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATg > 1:17107143/1‑67 (MQ=255) cTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATg > 1:15375452/1‑67 (MQ=255) cTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATg > 1:33292276/1‑67 (MQ=255) cTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATg > 1:40381668/1‑67 (MQ=255) | CGCGAAAAGCACCTGCGGTTGCGGTTCTTCCTTTAGTATCTAATCTGTTGTTCATGTGCCGGATAAACTATCCGGCACATCTTCTCTCTTCAACGCCCATTCTCATCCAGCGCAAACGTCGGTAGCTTAAGATG > CP009273/173399‑173532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |