| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092949 = | NA (NA) | 23 (0.040) | 6/100 | NT | 20.0% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 103 (0.170) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
Only 100 of 333 total aligned reads displayed.
TAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGccccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1093016‑1092949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC > CP009273/1093045‑1093116 AAAGCAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:21911584/68‑1 AAAGAAGAGCTCGTACGAAATTACGGGC‑TTTTATTTCGTAAATTGCACACACCGGGGGGATGAGAAGC < 1:13825590/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTTTATTGCACACACCGGGGGGATGAGAAGC < 1:40213574/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:6620160/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:32820234/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:30153279/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:29543940/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:7198125/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:1676995/68‑1 AAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:8406049/68‑1 AAAGAAGAGCTCGTACGAAACTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:33162102/68‑1 AAAGAAGAGCTCGTACGAAACTACGGGC‑‑TTTTTATCGTATATTCCACACACCGGGGGCATGAGAAGCC < 1:8011702/68‑1 AAACAAGAGCTCGTCCGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:31401783/68‑1 AAACAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC < 1:25411467/68‑1 AAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGC > 1:24840355/1‑67 AAGAAGAGCTCGTACGAAAGTACGGGC‑‑TTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC < 1:26325809/68‑1 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC < 1:44722387/68‑1 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:29099619/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:24289506/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:38692120/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:1317050/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:210502/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:12340679/1‑67 AGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCC > 1:30533380/1‑67 GAAGAGCTCGTACGAAAGTCCGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:13973030/1‑68 GAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTTCGTATATTGCCCACACCGGGGGGATGAGAAGCC > 1:36238976/1‑67 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTTTATTGCACACACCGGGTGGATCAGAAGCCCC > 1:4334911/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTTTATTGCACACACCGGGGGGATGAGCAGCCCC > 1:1264516/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCg > 1:24944020/1‑67 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:4794444/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:49418353/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:33496423/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:34117785/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:34800076/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:35403428/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:32942348/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:49514771/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:35870507/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:36445845/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:531107/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:50899985/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:47132120/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:4685963/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:29461021/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:406483/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:41271046/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:41863231/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:42324809/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:42834098/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:43618136/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:4515349/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:32067191/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:14350655/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:1221284/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:15737868/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:16918367/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:18784574/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:19638583/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:20289807/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:22271022/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:11974598/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:2300240/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:23708835/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:24420400/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:9549261/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:11526675/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:28614487/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:28115805/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:5807967/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:23798593/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGAAGAGAAGCCCC > 1:11305109/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGCATCAGACGCCCC > 1:25927542/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACAACTGGGGGATGAGAAGCCCC > 1:18139392/1‑68 GAAGAGCTCGTACGAAAGTACGGGC‑GTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:30714414/1‑68 GAAGAGCACGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACAAACCGGGGGGATGAGAAGCCCC > 1:37858057/1‑68 AAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:39328630/1‑68 AAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:23505581/1‑68 AAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC > 1:17518423/1‑67 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:48166529/1‑67 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:32390118/1‑67 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:4424365/1‑67 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG > 1:43927540/1‑67 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG < 1:28965456/67‑1 AGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG < 1:32664566/67‑1 AGAGCTCGTACCAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCC < 1:39797399/66‑1 cAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGAT < 1:5548303/67‑1 cCGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACCCCGGGGGGATGAGAAGCCCCGATACGTTGC < 1:9436979/66‑1 ACGAACGTACGGGC‑TTTTTTTTCGTATATTGCCCACACCGGGGGGATGAGAAGCCCCGATACGTTGC < 1:10439298/67‑1 ACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGATACGTTGC < 1:15934377/67‑1 ACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGATACGTTGC < 1:14899164/67‑1 CGAAACTACGGGC‑TTTTTTTTCGTAAATTCCACACACCGGGGGGATGAGAAGCCCCGATACGTTGCCG < 1:10042083/68‑1 CGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGACAAGCCCCGATACGTTGCCGTATACACA < 1:12971468/68‑1 TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGATACGTTGCCGTATACACACTTT < 1:50442801/67‑1 CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > 1:31706259/1‑68 CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > 1:26790230/1‑68 CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT < 1:18466085/68‑1 CCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATT < 1:36932458/68‑1 CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTG < 1:37418423/68‑1 CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTG < 1:21315032/68‑1 CGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGT < 1:50146218/68‑1 TAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGccccga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1093016‑1092949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTC > CP009273/1093045‑1093116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |