| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1092949 = | NA (NA) | 23 (0.040) | 6/100 | NT | 20.0% | intergenic (+664/+72) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | CP009273 | 1093045 = | 103 (0.170) | noncoding (64/88 nt) | serX | tRNA‑Ser | |||||
Only 100 of 503 total aligned reads displayed.
CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 | cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:46605496/68‑1 (MQ=40)cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:42459304/68‑1 (MQ=40)cGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc < 1:1354216/68‑1 (MQ=40)aaagcagaccgcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:23047223‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:36256408‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:34672770‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:21916288‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:6620160‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:32854597‑M2/1‑1 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc < 1:51301810‑M2/1‑1 (MQ=255) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:17569404/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:17174666/68‑1 (MQ=40) gAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:8199846/68‑1 (MQ=40) aaagaagagctcgtacgaaactacgggctttttatcgtatattccacacaccgggggcatgagaagcc < 1:8011702‑M2/2‑1 (MQ=255) caaaaaaaCCCCCTACCTTCGTACGCGCCCTTCATTAAAAAAGGCGGTGAGGGGGGGATTCGAAcccc < 1:29469899/67‑1 (MQ=9) aagaagagctcgtacgaaagtacgggctttttttcgtatattgcacacaccggggggatgagaagccc < 1:26325809‑M2/3‑1 (MQ=255) aaaacaacGCCCGTACTTTCCTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:18524175/68‑1 (MQ=14) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccgg > 1:33603865/1‑66 (MQ=255) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:33408945/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:25733557/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:24655771/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:37852094/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc > 1:28766971/1‑67 (MQ=40) aaaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCCAAccca > 1:41715095/1‑67 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccg > 1:24944020‑M2/65‑67 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:29143133‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:29965546‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:30247360‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:36445845‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:42701906‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:34117785‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:44230454‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:3133793‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:3189354‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:38747002‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:32960049‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:4515349‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:8425886‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11246517‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:11682144‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:12151920‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:7193503‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:5476853‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:1583586‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:50338070‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:49585168‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:49418353‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:18057421‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:18222260‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:48905408‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:19638583‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:47478617‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:2079261‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:47123776‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:22541810‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:23723977‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:25440250‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttattatattgaacacaccggggggaagagaaccccc > 1:5938157‑M2/65‑68 (MQ=255) gaagagctcgtacgaaagtacgggcgtttttttcgtatattgcacacaccggggggatgagaagcccc > 1:30714414‑M2/65‑68 (MQ=255) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:40235647/68‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:36800170/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:10520572/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:3226644/67‑1 (MQ=40) aaaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:28418454/67‑1 (MQ=40) aagagctcttacgaaagtacgggcttttttttcgtatatggcacacaccggggggatgagaagcccc > 1:48102713‑M2/64‑67 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc > 1:24328735‑M2/64‑67 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:3706957‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:14682031‑M2/64‑68 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgaatattgaacacacccggggcaagagacgCCCCg > 1:43481973‑M2/64‑68 (MQ=255) cgagctcgtacgaaagtacggggttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:24020663‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccgggggcctgagcagCCCCg > 1:37945202‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:1937500‑M2/4‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:2128679‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:1269965‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:13950814‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:43733489‑M2/63‑67 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:32664566‑M2/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg > 1:40653648‑M2/63‑67 (MQ=255) agagctcgtaccaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:39797399‑M2/4‑1 (MQ=255) agagctcgaacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:35344906‑M2/5‑1 (MQ=255) aaGCCCGTACTTTCGTACGAGCTCGTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc > 1:4322862/1‑68 (MQ=255) aGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:7482801/1‑68 (MQ=40) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGACCCCCCGATACGtt > 1:13006739/1‑68 (MQ=255) cccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt > 1:15288256/1‑68 (MQ=39) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGtt < 1:9086642/67‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:41548153/66‑1 (MQ=37) ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:50921066/66‑1 (MQ=37) cctACTTTCCTACGAGCCCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:16627434/66‑1 (MQ=11) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:2685849/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:16106814/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:16817666/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:20207704/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:27956905/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:44457225/68‑1 (MQ=35) cGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:141648/68‑1 (MQ=25) acgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGc < 1:9493393‑M2/14‑1 (MQ=255) cgaaactacgggcttttttttcgtaaattccacacaccggggggatgagaagCCCCGATACGTTGCCg < 1:10042083‑M2/16‑1 (MQ=255) ccctacgggcttttttttcgtatattccacaccccggggggatgacaagCCCCGATACGTTGCCGta < 1:29017747‑M2/18‑1 (MQ=255) gcttttttttcgtatattgcacacaccggggggatgagaagCCCCGATACGTTGCCGTATACACACt < 1:35860426‑M2/26‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:12255208‑M2/68‑1 (MQ=255) | CGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/1092978‑1093112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |