New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2540715345 (0.560)23 (0.040) 6/94 NT 5.8% coding (684/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system
?CP009273 = 2540730 460 (0.890)coding (699/1425 nt) murP N‑acetylmuramic acid permease, EIIBC component, PTS system

Only 100 of 369 total aligned reads displayed.

AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540641‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664
                                                                                                                                              
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:27088923/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:12172586/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:36610380/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:37209883/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:33508578/1‑68
 ACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGC                                                                           >  1:32337125/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGCTCCGCGCG                                                                          >  1:26085982/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGCTCCGCGCG                                                                          >  1:39056621/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31650821/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:35390458/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7024016/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:33888909/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:32789543/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:31926733/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:28440503/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7200689/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:30812633/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:30206892/68‑1
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:29883386/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:29498044/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:7441660/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:10107207/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5553459/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:5064104/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:49235396/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:48766256/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:48362283/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:47310916/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:46859567/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:46221872/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:45115494/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:35433301/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:43872632/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:41978001/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:41140792/68‑1
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:40286557/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:39329029/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:38399382/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:35998499/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:15651086/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:19752334/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:19470096/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8266615/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18535116/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:18092270/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:8360370/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16945711/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:16292380/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:27555264/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:1508117/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14537754/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:14207075/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13884415/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:13362624/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:9264169/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:11644921/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20591512/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:28319041/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:20767301/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:26472203/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:25717134/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:21857464/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:25640033/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:24730886/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:23829449/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:22418415/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGC                                                                             >  1:1262912/1‑65
  CCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTGTGGTCTGCCCATCGATCCGCGCG                                                                          >  1:34000319/1‑68
  CCCCGCAGCGACCACCGGTTACTACGCAGGTTTTCACGATTTCTTTGGTCTGCCCATCGAGCCGCGCG                                                                          >  1:42905922/1‑68
  CCCCGCAGCGACCACCGGTCACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCG                                                                          <  1:36324932/68‑1
    CCGCAGCGACCACCGGTTAGTACGCCGGTTTTCACGATTGCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:23004560/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:41211845/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:20350363/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:2670488/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:22102492/68‑1
    CCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGC                                                                        <  1:37444197/68‑1
                      ACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAAT                                                      <  1:21264488/68‑1
                                           TCTTTGGTCTGCCCATCGATCCGCGCGGCAATCAGCCCGCCGAGAATATTGCCGCGCGGATCGATGG                                  >  1:44374622/1‑67
                                                  TCTGCCCATCGATCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGCCCA                          >  1:39666622/1‑68
                                                              cCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGA              >  1:49718621/2‑68
                                                              TCCGCGCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGA              >  1:47901567/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:6174809/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:6493562/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:16646326/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:42358066/1‑68
                                                                   GCGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACC         >  1:51036314/1‑68
                                                                    CGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:5421968/1‑68
                                                                    CGGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:1039691/1‑68
                                                                     GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGG       <  1:41549411/68‑1
                                                                     GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:35192996/1‑67
                                                                     GGCAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCG        >  1:9565357/1‑67
                                                                       CAATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGC      <  1:44021890/67‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:18946829/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    <  1:17357247/68‑1
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGT    >  1:11784400/1‑68
                                                                        AATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCG     <  1:5906487/67‑1
                                                                         ATCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTA   >  1:29213674/1‑68
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:45657422/68‑1
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  >  1:34657479/1‑68
                                                                          TCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  1:31483101/68‑1
                                                                                                                                              
AACCCCGCAGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2540641‑2540715
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcaatCAGCACGCCGATAATATTGCCGCGCGGATCGATGGGCAGACCAAAGAAATCGTGAAAACCGGCGTAG  <  CP009273/2540730‑2540664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.