| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2540715 | 345 (0.560) | 23 (0.040) | 6/94 | NT | 5.8% | coding (684/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system |
| ? | CP009273 | = 2540730 | 460 (0.890) | coding (699/1425 nt) | murP | N‑acetylmuramic acid permease, EIIBC component, PTS system | |||||
Only 100 of 656 total aligned reads displayed.
AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 | aGCGACCACCGGTTACTACGCCGGTTTTCCCGATTTCTTTGGTCTGCCCCTCGATCCGCGCGGCtata > 1:16894392/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:50725090/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:49767182/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:28231297/1‑68 (MQ=255)aGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata > 1:21752564/1‑68 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:15717535/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAatat < 1:636141/66‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:6508828/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:48805515/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:3040035/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:41222627/65‑1 (MQ=255) gACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:38823384/65‑1 (MQ=255) gACCACCGCTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAata < 1:23952019/65‑1 (MQ=255) accGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCg > 1:50032334/1‑67 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:6822714/1‑68 (MQ=255) ggTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt < 1:27089207/68‑1 (MQ=255) ttACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:48063344/1‑66 (MQ=255) ttACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:26300944/1‑66 (MQ=255) ttACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGt > 1:13932089/1‑66 (MQ=255) tactacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGc < 1:5281260/67‑1 (MQ=255) actacGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGCCAATATTATCGGCGTGCTg > 1:35987195/1‑68 (MQ=255) cTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGa > 1:34657479‑M2/1‑67 (MQ=255) tACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGat < 1:33327603‑M2/68‑3 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt > 1:42568792‑M2/1‑65 (MQ=255) aCGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:11936462‑M2/68‑4 (MQ=255) cGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGatt < 1:5906487‑M2/67‑4 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:14324268‑M2/67‑5 (MQ=255) gCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattg < 1:4390085‑M2/67‑5 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccg > 1:35394940‑M2/1‑61 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccg > 1:713577‑M2/1‑61 (MQ=255) cGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgcc > 1:9565357‑M2/1‑61 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:22714008‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:23347212‑M2/1‑60 (MQ=255) ggTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgc > 1:31944182‑M2/1‑60 (MQ=255) ttacACGATTTCTTTGGTCTGCCCATCGATCCGCGCGTCAATATTATCGGCGTGCTGATTGCCGCGt < 1:16183221/64‑1 (MQ=255) cACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGc < 1:40368297/68‑1 (MQ=255) aCGTTTGCTTTGGTCTGCCCATCGATCCGGGCGGCAATATTTTCGGCGTGCTGattgccgcgcggatc > 1:47528833‑M2/1‑53 (MQ=255) aCGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTggg > 1:7871404/1‑66 (MQ=255) tttCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTgcg < 1:9284424/68‑1 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCTGCGTGGGCCTGCGcc < 1:49425932/68‑1 (MQ=255) tCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGcc < 1:26550942/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:39294882/68‑1 (MQ=255) ttGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGc < 1:31750829/68‑1 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:44497862/1‑68 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa > 1:25839997/1‑68 (MQ=255) tGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCa < 1:26801535/68‑1 (MQ=255) tGGGCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:39666622‑M2/1‑43 (MQ=255) tGGCCCGCCCATCGATCCGCGCGGCAATATTATCGGCGGGCTGatggccgcgcggatcgatgggcaga > 1:34386423‑M2/1‑43 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:44970405/68‑1 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:47118822/68‑1 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt < 1:20724705/68‑1 (MQ=255) ggTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAt > 1:18928126/1‑68 (MQ=255) gTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCAtt > 1:19470317/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacgccgattatattgccgcgcggatcgatggggagccca > 1:39062727‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATcagcacgccgataatattgccgcgcggatggatgggcagacca > 1:29210500‑M1/1‑25 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:45725033/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:8320438/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:46431091/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:35186544/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:14169149/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:36875017/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:17956382/1‑68 (MQ=255) tCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTg > 1:36359821/1‑68 (MQ=255) cATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCa > 1:9020557/1‑68 (MQ=255) aTCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:8560651/68‑1 (MQ=255) aTCGAGCCCCGCGGCAATAGAATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCAt < 1:32918033/68‑1 (MQ=255) tCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATg > 1:30969855/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:10822324/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:20310857/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:21176412/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt < 1:48483013/68‑1 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:25030797/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:37740362/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:10011618/1‑68 (MQ=255) gATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGt > 1:42172829/1‑68 (MQ=255) gcccgcGCGGCAATATTATCGGCGTGCTGattgccgcgcggatcgatgggcaga > 1:37301420‑M2/3‑29 (MQ=255) tCCGCGCGGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtga > 1:44294321‑M1/1‑13 (MQ=255) gcgGCAATcagcccgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:40839128‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggttcgttgggcagaccaaagaaatagtgaaaacc > 1:2566745‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc < 1:38305626‑M1/68‑61 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc > 1:51036314‑M1/1‑8 (MQ=255) gcgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaacc < 1:31294510‑M1/68‑61 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:4540647/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:19183992/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:33823163/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:29739611/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:17313251/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:11276504/68‑1 (MQ=255) gcgGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGcgccgc < 1:13078984/68‑1 (MQ=255) cgGCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccg > 1:1039691‑M1/1‑7 (MQ=255) ggCAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccgg < 1:41549411‑M1/68‑63 (MQ=255) gCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCttt > 1:22413625/1‑68 (MQ=255) cAATcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggc < 1:16519878‑M1/67‑64 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgt > 1:11784400‑M1/1‑3 (MQ=255) aaTcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcg < 1:7626671‑M1/67‑65 (MQ=255) aaTATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTAt < 1:15035940/68‑1 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:13487422‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:5746148‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:5478228‑M1/68‑68 (MQ=255) tcagcacgccgataatattgccgcgcggatcgatgggcagaccaaagaaatcgtgaaaaccggcgtag < 1:30034148‑M1/68‑68 (MQ=255) | AGCGACCACCGGTTACTACGCCGGTTTTCACGATTTCTTTGGTCTGCCCATCGATCCGCGCGGCAATATTATCGGCGTGCTGATTGCCGCGTGGGCCTGCGCCCGCATTGAAGGCATGGTGCGCCGCTTTATGC > CP009273/2540649‑2540782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |