| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2787742 = | 749 (1.210) | 52 (0.100) | 11/96 | NT | 8.8% | coding (131/1401 nt) | gabP | gamma‑aminobutyrate transporter |
| ? | CP009273 | 2787778 = | 437 (0.820) | coding (167/1401 nt) | gabP | gamma‑aminobutyrate transporter | |||||
Only 100 of 146 total aligned reads displayed.
CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2787816‑2787742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT > CP009273/2787778‑2787843 CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACC > 1:27677635/1‑68CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACC > 1:29636823/1‑68CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACC > 1:14155586/1‑68 CATTTCCGCCAACATCCGCATAATCATACCCCCCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:49383120/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:22124305/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:36510285/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:4418699/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:15741803/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:38638945/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:14575155/68‑1 CATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCG < 1:38685333/68‑1 TTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCC < 1:42869325/68‑1 TTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCC < 1:25663953/68‑1 TTCCGCCAACATCCGCATAATCATCACCCCCCGTCGCCCGGCGAACAGATAGGCGAGTAATACCGCCG > 1:4820032/1‑68 TTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCG > 1:22630403/1‑68 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG < 1:1320422/68‑1 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG < 1:5161006/68‑1 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG > 1:36624058/1‑68 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG > 1:8788727/1‑68 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG < 1:46799065/68‑1 TCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGG > 1:36578067/1‑68 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:43200540/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:19819177/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:41361249/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:24072420/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:36314806/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:28522336/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:1123358/68‑1 CCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG < 1:5644059/68‑1 CGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGC < 1:20239178/68‑1 CGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGG > 1:46584315/1‑67 GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT < 1:23549876/68‑1 GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT < 1:12455918/68‑1 GCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCT < 1:25153364/68‑1 CAACATCCGCATTATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC < 1:20097018/68‑1 CAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTAC < 1:9137648/68‑1 AACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACT < 1:40855615/68‑1 AACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACT < 1:13521332/68‑1 AACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACT < 1:6410010/68‑1 ATCCGCATAATCATAACCACCAGTAGCCCGGCGAACCGATAGGCCAGTAATACCGCCGGGCTACTGGT < 1:49836692/68‑1 ATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGT < 1:24110875/68‑1 ATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGT < 1:10493760/68‑1 TCCGCATAATCATAACCACCAGTCGCCCGGCGAACAGATAGGCCCGCAATACCGCCGGGCTACTGGTG < 1:47200417/68‑1 cccCATAATCATAACCACCAGTACCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:20582596/65‑1 CCGCATACTCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:28436424/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACATATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:6972672/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTACTACCGCCGGGCTACTGGTGG < 1:30043311/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:41832015/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:34961851/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:9894021/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:16775887/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:23155356/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:23925847/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:18593084/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:27179343/68‑1 CCGCATAATCATAACCACCAGTAGCCCGGCGAACAGAAAGCCCAGTAATACCGCCGGGCTACTGGTGG < 1:11977306/68‑1 CCGCATAATCATAACCACCAGAAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGG < 1:18354537/68‑1 CCGCAAAATCTTAACCACCAGTAGCCCGGCGAACAGATACGCCAGTAATACCGCCGGGCTACTGGTGG < 1:21194515/68‑1 CCGCAAAATCATAACCCCCAGTAGCCCGGCGAACAGATAGCCCAGTAATACCGCCGGGCTACTGGTGG < 1:21403175/68‑1 CGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGT < 1:20628673/68‑1 aAATCATAACCACCAGAACCCCGGCGACCAGATAGCCCAGTAATACCGCCGGGCTACTGGTGGTTATG < 1:42371877/67‑1 TAATCATAACCCCCAGTAGCCCGGCCAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATG < 1:12244679/68‑1 TAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATG < 1:35590053/68‑1 TAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATG < 1:12047455/68‑1 AATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGA < 1:27198828/68‑1 ATCATCACCCCCAGTAGCCCGGCGAACAGACAGGCCCGTAAGACCGCCGGGCTACTGGTGGTTATGAT < 1:51126878/68‑1 aaAACCACCAGTAGCCCCGCCAACAGATAGCCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTAT < 1:35449006/66‑1 ATAACCACCCGTAGCCCGGCGAACAGATAGGCCAGTAAAACCGCCGGGCTACTGGTGGTTATGATTAT < 1:11408992/68‑1 ATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTAT < 1:8274163/68‑1 ATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTAT < 1:28160146/68‑1 ATAACCACCAGTAGCCCGGCGAACAGATAGCCCAGTAATACCGCCGGGCTACTGGTGGTTATGATTAT < 1:8127720/68‑1 cgcCGAACAGATCGGCCACCAATCCCCCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAA < 1:14592185/65‑1 cAACAGATCCGCCAGTAATCCCGCCGGGCAACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGG < 1:46159431/67‑1 ACAGATCGGCCAGTAATCCCGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGC < 1:9802473/67‑1 CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG > 1:38250278/1‑68 CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG > 1:45086143/1‑68 CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG > 1:50855621/1‑68 CGCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCG > 1:48379350/1‑68 GCCGGGCTACTGGTTGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGG < 1:40994056/68‑1 GCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGG < 1:30311479/68‑1 GCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGG < 1:32256999/68‑1 GCCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGG < 1:38861219/68‑1 CCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGT > 1:16359309/1‑68 CCGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGT > 1:13620773/1‑68 CGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTT < 1:23200106/68‑1 CGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTT < 1:43650670/68‑1 CGGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTT < 1:12138278/68‑1 CGGGCGACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACTCCCGATACCGGTT < 1:34733273/68‑1 GGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATTCCGGTTC > 1:3116733/1‑68 GGGCTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTC < 1:45915758/68‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:12419021/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:39212049/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:24748315/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:43397058/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:5955666/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:26655353/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:12645680/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:26297968/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:18075023/67‑1 CTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT < 1:47466615/67‑1 CCATTTCCGCCAACATCCGCATAATCATAACCACCAGTAGCCCGGCGAACAGATAGGCCAGTAATACCGCCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2787816‑2787742‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggcTACTGGTGGTTATGATTATGCGGATGTTGGCGGAAATGGCGGTTGCCACGCCCGATACCGGTTCGT > CP009273/2787778‑2787843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |