New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2974088NA (NA)5 (0.010)
+CGGGCCGGATGTACAGC		 4/78 NT NA intergenic (‑94/+35) ygeA/araE Asp/Glu_racemase family protein/arabinose transporter
?CP009273 = 2974100 NA (NA)noncoding (9/23 nt) REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences

GAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2974037‑2974088
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCC  <  CP009273/2974100‑2974058
                                                    |||||||||||||||||                                           
GAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACA                                               >  1:28847403/1‑67
       ACAAACGCCTCACCGGCCAAGTGCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACAGCACATCC                                       >  1:5123066/1‑68
                             GCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACAGCACATCCGGCCCTTTTTTCGTTAATAGAG                 <  1:5454616/68‑1
                                    CTCTATTAACGAAAAACGGGCCGGATGTACAGCACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC          <  1:29700976/68‑1
                                    CTCAATTAACGAAAAACGGGCCGGATGTACACCACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC          <  1:37239448/68‑1
                                            cCGAAAAACGGGCCGGATGACCACCACATCCGGCCCTTTTTTCTTTAATAGAGATTGGGCACTTGGCC  <  1:12542914/67‑1
                                                    |||||||||||||||||                                           
GAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2974037‑2974088
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCC  <  CP009273/2974100‑2974058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.