| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974088 | NA (NA) | 5 (0.010) +CGGGCCGGATGTACAGC |
4/78 | NT | NA | intergenic (‑94/+35) | ygeA/araE | Asp/Glu_racemase family protein/arabinose transporter |
| ? | CP009273 | = 2974100 | NA (NA) | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 647 total aligned reads displayed.
TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGC > CP009273/2974033‑2974166 | tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:49175062‑M1/1‑68 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:26920886‑M1/1‑68 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:15650219‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:16179496‑M1/68‑1 (MQ=255) aaGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:35881382‑M1/1‑67 (MQ=255) aGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTAc > 1:34712806/1‑68 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:26631153/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:25049915/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:24358620/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:28969763/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:41718725/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:44484200/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:1190654/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGACAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAAGTACa > 1:4604291/1‑67 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa < 1:136925/66‑1 (MQ=255) aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAg < 1:21686821/67‑1 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGc > 1:19226315/1‑67 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac < 1:47725632‑M2/68‑3 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:45577773‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:38067516‑M2/1‑65 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:33604536‑M2/68‑7 (MQ=255) aCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggc < 1:37578616‑M2/67‑10 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGTGGTgctgtgcctccggggc > 1:23018282‑M1/1‑52 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:39374947‑M2/68‑12 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:46718171/1‑68 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:51047540/1‑68 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:24093238/1‑68 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:38733862/1‑68 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:23497978/1‑68 (MQ=255) cAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaa < 1:48163427/68‑1 (MQ=255) cAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaa < 1:27851448/68‑1 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:28507783/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:4895396/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:11091297/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:14406051/1‑67 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:172815/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:39871802/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:31368620/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAAAGAAAAAAGGGCCGGATGTggtggtcatccggcccgtttttcgg < 1:12542914‑M2/68‑26 (MQ=255) cAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGa < 1:5145731/67‑1 (MQ=255) aaGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:40536955/68‑1 (MQ=255) aaGTGCCCAAGCTCTATACACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg < 1:189548/68‑1 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa < 1:26012552/68‑1 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 1:42180125/1‑68 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGa > 1:31747900/1‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGata > 1:16348221/1‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGata > 1:5966609/1‑68 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:11542837/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:38453668/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:36739174/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:19539613/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAACGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:31140869/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAttt < 1:50785314/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:13027806/1‑67 (MQ=255) tctcTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:3619456/1‑66 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggc > 1:37235849‑M1/1‑28 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTgctgtacatccggcccgtttttcgttaatagagattgggc < 1:5454616‑M2/68‑41 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:43551438/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:6303556/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:29889329/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:35211277/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:32770658/1‑67 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:42762360/1‑68 (MQ=255) ctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa < 1:7453978/68‑1 (MQ=255) aTTAACGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcactt > 1:31964177‑M1/1‑24 (MQ=255) aTTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAAc < 1:20260964/68‑1 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt < 1:21067728/68‑1 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:6980762/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:15034547/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:30786732/1‑68 (MQ=255) aaCGAAAAAAGGGCCGGATGAACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtc < 1:22119202/68‑1 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAACTCAGCCGCCGATATTTCTCAACTtctc > 1:40095355/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACTCCGATATTTCTCAACTtctc > 1:22306072/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:43878434/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:16893978/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:41047328/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:29596849/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:1772496/1‑68 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:24604748/68‑1 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:49785276/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCt > 1:1003762/1‑67 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:12225904/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:50233447/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:91424/68‑1 (MQ=255) gggCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcg < 1:27599195‑M1/68‑58 (MQ=255) gCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:33494951/1‑68 (MQ=255) ccGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtt < 1:44239330‑M1/67‑60 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:32159982/67‑1 (MQ=255) ggATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgt < 1:46514985‑M1/68‑63 (MQ=255) ggATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgt < 1:44931860‑M1/68‑63 (MQ=255) ggATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgt < 1:25578855‑M1/68‑63 (MQ=255) ggATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt < 1:23256379/68‑1 (MQ=255) ggATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGt < 1:18551233/68‑1 (MQ=255) gATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttg > 1:8633225‑M1/1‑5 (MQ=255) aTGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtc < 1:48456531‑M1/67‑64 (MQ=255) aTGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtc > 1:34237220‑M1/1‑4 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:4529147‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:2624209‑M1/1‑3 (MQ=255) tGTACAGCACATCCGGCCCGTGAAATCAGCGGCCGATAGTTCTCAACTTCTCGCCTGCCTTCAGttt > 1:7946472/1‑67 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:945610/68‑1 (MQ=255) | TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGC > CP009273/2974033‑2974166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |