| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4049883 | NA (NA) | 10 (0.020) | 6/98 | NT | NA | noncoding (53/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4049915 | NA (NA) | noncoding (85/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 915 total aligned reads displayed.
GATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCC > CP009273/4049816‑4049947 | gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:25942830/1‑68 (MQ=255)gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:6632786/1‑68 (MQ=255)gATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:7380156/1‑68 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:34631747/1‑67 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:47815179/1‑67 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:31646478/1‑67 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:28294050/1‑67 (MQ=255) aTAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAg > 1:13913940/1‑67 (MQ=255) gCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccg > 1:41198765‑M1/1‑64 (MQ=255) gCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccg > 1:31098407‑M1/1‑64 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccgga > 1:32799157‑M1/1‑62 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccgg < 1:17253491‑M1/67‑6 (MQ=255) tGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccgg < 1:5753614‑M1/67‑6 (MQ=255) gACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGgccggat > 1:23469358‑M1/1‑61 (MQ=255) cAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAAATCATCACCGTGTAGGCCGGATaa > 1:396518/1‑68 (MQ=255) aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg > 1:2767383/1‑67 (MQ=255) aaCTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAg > 1:12634688/1‑67 (MQ=255) tCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCa < 1:38710362/68‑1 (MQ=255) gTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAttt > 1:32331681/1‑67 (MQ=255) agagCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTc > 1:49394460/1‑67 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCA < 1:9385522‑M2/67‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCA < 1:26423998‑M2/67‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCA < 1:35357958‑M2/67‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCA > 1:5973897‑M2/1‑67 (MQ=255) gACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCC < 1:49760807‑M2/68‑1 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGG > 1:43188306‑M2/1‑68 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGG > 1:1973613‑M2/1‑68 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGG > 1:33682721‑M2/1‑68 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGG > 1:29096610‑M2/1‑68 (MQ=255) cTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGG > 1:35957961‑M2/1‑68 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt > 1:23918977/1‑68 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt < 1:24369735/68‑1 (MQ=255) ccTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTg > 1:24886747/1‑68 (MQ=255) ccTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTg > 1:11307162/1‑68 (MQ=255) tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt > 1:50518908/1‑68 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtg > 1:25632074/1‑68 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCgtgaagt < 1:800118‑M1/67‑4 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt > 1:2871568‑M1/1‑67 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:14445690‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:22064544‑M1/67‑1 (MQ=255) CCGGCCTACCACATCATCAGCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:21664977‑M1/66‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:50155243‑M1/66‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:4904751‑M1/1‑68 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:48085333‑M1/1‑68 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:42469237‑M1/1‑68 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGc > 1:47163988‑M1/1‑68 (MQ=255) GCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt < 1:3679448‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGTCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:35844608‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCGTCCGGCGTGATGTgctag < 1:17549851‑M1/67‑3 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATGCGGCGTGATGTGCTTg < 1:30101442‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGCTGTGCTTg < 1:27168993‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:37881943‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:16970201‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg > 1:28470036‑M1/1‑67 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:13280549‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:25257097‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:22707682‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:51053220‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:8938798‑M1/67‑1 (MQ=255) CTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:48485282‑M1/1‑68 (MQ=255) CTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGcc > 1:46388165‑M1/1‑68 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg > 1:11763894/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:45037219/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa < 1:6298507/68‑1 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa < 1:10731948/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:42935757/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:45504067/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:19252571/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTTCGTCGCATCCGGCGTGATGTGCTTGCCACCGTTc < 1:17843055/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:40181267/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:30332085/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:16534008/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:38129411/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:39313724/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:15086421/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:37416087/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:2117370/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:18561743/68‑1 (MQ=255) tcatcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc > 1:20671512/1‑67 (MQ=255) tcatcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc > 1:33292004/1‑67 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCCCCGATccc > 1:41964763/1‑68 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:43504277/1‑68 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:34271444/1‑68 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:29604393/1‑68 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa > 1:2020877/1‑68 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa > 1:46664479/1‑68 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa > 1:4068569/1‑68 (MQ=255) aCCGTGTAGgccggatgcgacgcaaatgcgtcttatccggcctacccggtgatgatgtggtaggccgg > 1:35083454‑M1/1‑9 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:15876455/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:8495470/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:10014886/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:22341238/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:23026387/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:4465284/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:44138047/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAGGTGCTTGCCACCGATCCCAgg > 1:47411305/1‑67 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:30718787/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:36299355/1‑65 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTg < 1:5258540/68‑1 (MQ=255) gtAGgccggatgcgacgcaaatgcgtcttatccggcctacccggtgatgatgtggtaggccggagcag > 1:7605543‑M1/1‑4 (MQ=255) | GATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCC > CP009273/4049816‑4049947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |