| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4049883 | NA (NA) | 10 (0.020) | 6/98 | NT | NA | noncoding (53/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 4049915 | NA (NA) | noncoding (85/85 nt) | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP295 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 1170 total aligned reads displayed.
TCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAAC > CP009273/4049848‑4049982 | aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGt > 1:46034168/1‑68 (MQ=255) cttaTCCGGCCTACCACATCATCCCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa < 1:49443492‑M1/64‑1 (MQ=255) cttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa < 1:19764855‑M1/64‑1 (MQ=255) tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt > 1:12976546/1‑68 (MQ=255) tGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAt > 1:31292315/1‑68 (MQ=255) aTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:7437582‑M1/67‑1 (MQ=255) tCCGGCCTCCCACATCATCACCGTGTAGGCCGTATAAGACGCATTGGCGTCGCATCCGGCctacacg > 1:47362316‑M2/1‑60 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:3613279‑M1/67‑1 (MQ=255) TCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGAtgt < 1:22565825‑M1/67‑1 (MQ=255) gcgtacatcgctctgcgtcgcgaagaagatgaccgcgtgcgtatgactcCGCATCCGGCGTGATGTGc > 1:26031585‑M1/50‑68 (MQ=255) CCGGCCTCCCACATCATCACCGTGTAGGCCGGATAAGCCGCAGTTGCGTCGGATCCGGCGTGCtgt < 1:42118763‑M1/66‑1 (MQ=255) CCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCAGCCGGCGTGAtgt < 1:28840190‑M1/66‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:15559016‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:29301697‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:49100161‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:6223113‑M1/67‑1 (MQ=255) CCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTg < 1:50103042‑M1/67‑1 (MQ=255) cacaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg > 1:11763894/1‑68 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa < 1:47986500/68‑1 (MQ=255) acaTCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGa > 1:3052696/1‑68 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:19252571/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:42935757/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:41002306/68‑1 (MQ=255) catcatCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt < 1:25028388/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:42654258/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:27125423/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGAt > 1:5792549/1‑67 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:50491506/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:15086421/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:46427345/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:813006/68‑1 (MQ=255) atcatcACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc < 1:37868545/68‑1 (MQ=255) tcatcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATc > 1:20671512/1‑67 (MQ=255) catcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATccc > 1:39578379/1‑68 (MQ=255) tcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAg > 1:38052875/1‑68 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:10730832/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:29633008/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:10014886/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:41458492/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:44187352/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:44674027/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:23835885/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:16174104/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:7756554/1‑67 (MQ=255) aCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:1116855/1‑67 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:22827680/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:18678031/1‑65 (MQ=255) cGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAgg > 1:35605194/1‑65 (MQ=255) tgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTg > 1:21601049/1‑67 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGcc > 1:30111022‑M2/11‑68 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:50944917‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:51140817‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:37412557‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:33868578‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:32423089‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:26534074‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:27538848‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:24817231‑M2/57‑1 (MQ=255) gtaggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGc < 1:18193313‑M2/57‑1 (MQ=255) aggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCag > 1:27969102‑M2/9‑68 (MQ=255) gccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:25569718‑M2/7‑68 (MQ=255) gccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:8652019‑M2/7‑68 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCTGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:38971091‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGCTCCCAGGCCTGCCagag > 1:639576‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCCGGCCTGCCagag > 1:31800840‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:17141732‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:20248515‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:48393507‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:34671378‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:23384845‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:46811562‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:16608504‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:28594694‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:4366987‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:30831693‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:36831721‑M2/6‑67 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCagag > 1:32933932‑M2/6‑67 (MQ=255) tAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGc > 1:45505546/1‑68 (MQ=255) tAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGc > 1:13342682/1‑68 (MQ=255) aCGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaa > 1:9120694/1‑68 (MQ=255) cGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGaaaa > 1:34316489/1‑68 (MQ=255) gTCGCATCCGGCGTGATGTGCTTGCCCCGGTGCCCCGGCCTGCCGGCGCCAGGCGAAAGGTTTCCACg > 1:43336452/1‑68 (MQ=255) gTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACg > 1:9574529/1‑68 (MQ=255) gTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACg > 1:12066690/1‑68 (MQ=255) gTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACg > 1:2116485/1‑68 (MQ=255) gTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACg > 1:39943641/1‑68 (MQ=255) ATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCaa > 1:14457811‑M1/1‑67 (MQ=255) TCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 1:5477497‑M1/1‑68 (MQ=255) TCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 1:24282911‑M1/1‑68 (MQ=255) ccGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtca < 1:33241801‑M2/67‑63 (MQ=255) ccGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtca < 1:38665418‑M2/67‑63 (MQ=255) ccGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtca < 1:45137451‑M2/67‑63 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:17669583‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:17412191‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:22106237‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:36431965‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:6881574‑M2/1‑4 (MQ=255) cGGCctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagc > 1:35252499‑M2/1‑4 (MQ=255) GCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTaaa < 1:40499834‑M1/67‑1 (MQ=255) cctacacggtgatgatgtggtaggccggagcaggtgagtcgctctccaacgtgaagtttgtcagcta < 1:13940181‑M2/67‑67 (MQ=255) | TCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACTAAAAC > CP009273/4049848‑4049982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |