| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 559 (0.900) | 3143 (5.170) | 35/110 | NT | 83.1% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 730 (1.200) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 4492 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 | ttatcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATTcc < 1:10458382‑M1/27‑1 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:25714064‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:35151739‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:37569027‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:38980936‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:1294149‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:13459235‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:9072888‑M1/29‑3 (MQ=255) tCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCaa > 1:3103254/1‑68 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:36593949/1‑68 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:17378888/1‑66 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTACTGGCAGTTTa > 1:49813017/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:50723747/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:4531759/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:39927881/1‑68 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:26899971‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:21928816‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:10898129‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:21037076‑M1/2‑28 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:18830466‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:26514050‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:37122058‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:33424755‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:527426‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:38551814‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:7790700‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:30465140‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:29991056‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:2867548‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:48512943‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:5026477‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:959139‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:13965550‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:2288332‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:179573‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:16896618‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaaag > 1:19361865‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCg > 1:46560040/1‑67 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:23828128‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:47379116‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:15332376‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:6359841‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:32337346‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc < 1:12408970/67‑1 (MQ=255) tAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGcc > 1:41733574/1‑67 (MQ=255) aGCTGTCAAACATTAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAcc < 1:35605394/68‑1 (MQ=255) aGCTGTCAAACATGAGAACTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcc < 1:25230211‑M1/68‑47 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcat > 1:45746820‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:4798577‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:43083450‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:36121220‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:46212182‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:42178771‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:1835310‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:41265075‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:48944726‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:21489419‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:1201352‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:278295‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:2733483‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:24700192‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttagcgggtgaaacgact > 1:11461925‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg > 1:22395128/1‑47 (MQ=255) cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc > 1:44965096/1‑67 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg > 1:46966904‑M1/1‑19 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:10005120‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:49412594‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:6899268‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:1589442‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:4405294‑M1/68‑50 (MQ=255) gTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggt < 1:29576674‑M1/68‑51 (MQ=255) gTCAAACATGAGAATTCCatccgcttatccttgagaattattttttcgcgggtgaaacgactcctgg < 1:24344514‑M1/67‑50 (MQ=255) cAAACATGAGAATTCCatccgcttctccttgcgaattattttttcgcgggtgaaacgactcctggttt > 1:43615054‑M1/1‑16 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:40813597‑M1/1‑14 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:26150502‑M1/1‑14 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:7320214‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:14429272‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:39492000‑M1/68‑55 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:16258144‑M1/1‑14 (MQ=255) aaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCggg > 1:8342858/1‑67 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:23342381‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:20242092‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:8733187‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:14823074‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:34798917‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:32872485‑M1/1‑13 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:51089662‑M1/1‑13 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:20710630‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:44456023‑M1/1‑11 (MQ=255) agaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaa > 1:29160598‑M1/1‑8 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:40322097‑M1/67‑61 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag > 1:31380425‑M1/1‑7 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:28231736/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:19697861/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:34000325/67‑1 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:5800442‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:31802601‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:3447000‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:38118138‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:4261915‑M1/1‑3 (MQ=255) | GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |