| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 559 (0.900) | 3143 (5.170) | 35/110 | NT | 83.1% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 730 (1.200) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 4316 total aligned reads displayed.
TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 | gCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCa > 1:8168314/1‑67 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:36867955/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:27968354/1‑68 (MQ=255) ccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCATg > 1:48749620/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:32994245/1‑68 (MQ=255) cGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga < 1:24152891/66‑1 (MQ=255) tCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTc > 1:11350797/1‑68 (MQ=255) tCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTc > 1:30723055/1‑68 (MQ=255) cGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCggg < 1:13796262/68‑1 (MQ=255) agtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa > 1:38327821‑M2/30‑67 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:41091075‑M2/29‑68 (MQ=255) gataagctgttaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:21298542‑M2/42‑1 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:34524282‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:19927231‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:22705693‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:27067564‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:48233369‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:2631975‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:44821732‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:40654656‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:41977102‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:8937376‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:769571‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:6859571‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:16141034‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:39783891‑M2/42‑1 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:497125‑M2/42‑1 (MQ=255) gataagctgtcaaacatgagaattccATCCGATTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:23757841‑M2/27‑67 (MQ=255) tGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:151231/1‑66 (MQ=255) ataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:20916029‑M2/26‑66 (MQ=255) ataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:30252288‑M2/26‑66 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:50667632‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:28903560‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:14674104‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:13281070‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:35292014‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:18597415‑M2/44‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:171911/68‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:20534317/68‑1 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:19130930/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:29839770/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:38780616/1‑66 (MQ=255) agctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTcc < 1:15631299‑M2/46‑1 (MQ=255) ggtgtcaaacatgagaattccATCCGCTTCTCGTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:33518003‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTTTTTTTTCGCGGGAGAAACGACTCCt > 1:43370482‑M2/22‑68 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGCctcat > 1:44361236‑M2/22‑66 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:28492052‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:19576471‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:11895899‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:40214287‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:21773771‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:14294015‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:46088883‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:570742‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:24574506‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:32513541‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:24982750‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:31603586‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:16724417‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:25903922‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:29423534‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTATTCGCGGGTGAAACGACt > 1:25449009‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATGATTTTTTCGCGGGTGAAACGACt > 1:22188406‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATCATTTTTTCGCGGGTGAAACGACt > 1:12873686‑M2/22‑65 (MQ=255) tgtcaaacattagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:42425724‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:46926116‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:6248175‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:43843683‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:10455174‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:51061275‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:10005120‑M2/49‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:94847/67‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:50118123/67‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:34107847/67‑1 (MQ=255) tcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGtt > 1:37235708‑M2/18‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:12299508‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:36210968‑M2/15‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:46484126‑M2/15‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:26722420‑M2/15‑68 (MQ=255) cAAATACTGTTTCGTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:35750882/68‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:45650198‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:23165423‑M2/55‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGCTTGt > 1:42916032‑M2/14‑67 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:8550945‑M2/12‑68 (MQ=255) agaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:32047333‑M2/9‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:45248892/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:37687866/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:27546171/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:49240658/1‑67 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg > 1:39256532‑M2/8‑67 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc < 1:31248440‑M2/62‑1 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:5234959‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:47696899‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:18172397‑M2/6‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:41446785‑M2/6‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:47293417‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:3488915‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:17596313‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:7180197‑M2/4‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:10883421/1‑68 (MQ=255) | TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |