| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 495 (0.800) | 19 (0.040) | 10/94 | NT | 5.3% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 270 (0.520) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 652 total aligned reads displayed.
TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 | gcgaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtg < 1:1953136‑M1/1‑1 (MQ=255) gACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGGCCATTAAGATCAGCGCCGGGCGGCGGGCGAgg < 1:24051126/68‑1 (MQ=255) caCGGGACCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAgg < 1:27175245/67‑1 (MQ=255) gaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtggg > 1:28588733‑M1/66‑68 (MQ=255) gaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtggg > 1:31502236‑M1/66‑68 (MQ=255) gaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtggg > 1:47368918‑M1/66‑68 (MQ=255) gggAACCTGGCGCATTACTGTGGGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:5965192/1‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:14709578‑M1/64‑68 (MQ=255) aaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:22825914‑M1/64‑68 (MQ=255) ggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:26724752/1‑67 (MQ=255) cgatacggccgccatgctggaagggctggcggttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:6335787‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:46821816‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:29569590‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:29088762‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:48947111‑M1/62‑68 (MQ=255) gataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCa < 1:38886313‑M1/8‑1 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:36571069‑M1/59‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:16559696‑M1/59‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:39127825‑M1/59‑67 (MQ=255) cTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCg > 1:3455322/1‑68 (MQ=255) cTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCg > 1:16138897/1‑68 (MQ=255) gcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATc > 1:34080058/1‑68 (MQ=255) gcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATc > 1:32385995/1‑68 (MQ=255) cATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCa > 1:5209591/1‑68 (MQ=255) cATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCa > 1:19944569/1‑68 (MQ=255) tACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaa > 1:1790758/1‑66 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGTCGGCGGTCGAGGGCGGCATCGAGATCAAACt < 1:24799961/68‑1 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:10571740/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:37726683/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:40543244/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:25137431/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:8612979/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:15276664/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:20778431/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:16919888/1‑67 (MQ=255) tgagcgcCAGTTCGTCCATTAAGATCAGCGCCGTGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCg < 1:1015627/65‑1 (MQ=255) tcagcgcCAGTTCGACCATTAAGCTCAGCGCCGCGCGGCGGGCGAGGGCCGCATCGACATCAAACTc > 1:15553609/4‑67 (MQ=255) cgtgCGCCAGTTCGTCCACTAAGATCAGCGCTGTTAGGCGGGCGAGGGCGGCTTCGAGATCAAACTCg < 1:45065170/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGTGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:34874571/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGTCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:50215334/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGAATCGAGATCAAACTCGCt < 1:28859512/67‑1 (MQ=255) gccccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:46394154/64‑1 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:4339324/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:33125030/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:4283223/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:15920283/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGCGCGGCGGGCGAGGGCGGCAACGAGATCAAACTCGCTGat > 1:44211114/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:11286093/1‑68 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGGGAGGGCGGCATCGAGATCAAACTCGCTGagat > 1:47968030/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:30340162/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:28156877/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:32692859/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:8244868/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:25925972/1‑67 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:41191190/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:39912633/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:1382970/1‑68 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:44569462/68‑1 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:4592179/68‑1 (MQ=255) cGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:30811154/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:45581901/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:368957/68‑1 (MQ=255) gccgttaaaacgccaggcgtaccgtGGGCGGCAGCGAGATCAATCTCGCTGATATGCCGCCCACGGt < 1:23678255‑M1/42‑1 (MQ=255) aGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc > 1:41852932/1‑68 (MQ=255) cgttaaaacgccaggcgtaccgaGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc < 1:25429355‑M1/44‑1 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:23073361/1‑67 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:20300945/1‑67 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:9224580/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:12148308/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:13069607/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:48575637/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:27523193/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:21010059/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:31857099/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:33894529/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:43894476/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:18265599/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:7452256/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:40942424/1‑66 (MQ=255) gcCGGGCGGTGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:27908253/1‑68 (MQ=255) gcCGGGCGGCGGGCGCGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCCCGGTACGCCTGGCg > 1:2128662/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCACACTCGCTGATATGCCGCCCACGGTCCGCCTGGCg > 1:31123020/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGc < 1:42387126/67‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGc < 1:47150455/67‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:10840422/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:6871429/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:5699053/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:21885302/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg < 1:15103848/68‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:18559651/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:37284607/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:38027510/1‑68 (MQ=255) gcCGGGCGGCGGGCCAGGGCGGCAACGAGATCAAACTCGCTGATATGCCGCCCACCGTACCCCTGGCg > 1:49567620/1‑68 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:944817/1‑68 (MQ=255) ggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCa > 1:50822628/1‑68 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATTTGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:35223643‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:21670865‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:14110248‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:36022835‑M1/65‑1 (MQ=255) cgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAg < 1:2242903/67‑1 (MQ=255) | TGACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719509‑719643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |