| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 495 (0.800) | 19 (0.040) | 10/94 | NT | 5.3% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 270 (0.520) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 550 total aligned reads displayed.
CATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719547‑719680 | cATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCAc > 1:30509983/1‑68 (MQ=255) tctgccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:47672844‑M2/3‑1 (MQ=255) tctgccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:31576737‑M2/3‑1 (MQ=255) tctgccgttaaaacgccaggcgtaccgggggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:14959296‑M2/3‑1 (MQ=255) atcaaGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:37890855/65‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:47359027/68‑1 (MQ=255) tAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt > 1:45963107/1‑68 (MQ=255) gccgttaaaacgccaggcgtaccgtGGGCGGCAGCGAGATCAATCTCGCTGATATGCCGCCCACGGt < 1:23678255‑M1/42‑1 (MQ=255) aaGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt > 1:40961419/1‑67 (MQ=255) cgttaaaacgccaggcgtaccgaGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc < 1:25429355‑M1/44‑1 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:36204803/1‑67 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:16596825/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:40681585/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:32046031/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:31039131/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:27523193/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:2499392/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:15649246/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:46558896/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:13069607/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:9224580/1‑66 (MQ=255) taaaccgccaggcgcaccgtgggcggcatatcagcgagtttgctcgcgaagccgcccACGGTACGcc < 1:21815195‑M2/10‑1 (MQ=255) gcgcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTg > 1:48549696/1‑67 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGc < 1:47150455/67‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:39946931/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:10610578/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:37284607/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:43723904/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:5699053/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:6871463/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:22258042/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:18559651/1‑68 (MQ=255) gcCGGGCGGCGGGCCAGGGCGGCAACGAGATCAAACTCGCTGATATGCCGCCCACCGTACCCCTGGCg > 1:49567620/1‑68 (MQ=255) ccgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACGGTACGCCTGGCg < 1:15772682‑M2/15‑1 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:41266807/1‑68 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:29053584/1‑68 (MQ=255) cgggcgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:28299132/67‑1 (MQ=255) accgggggcggcatatcagcgagtttgatctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGc < 1:16970820‑M2/25‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:21670865‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:19930510‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGa < 1:14110248‑M1/65‑1 (MQ=255) cgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGGACGCCTGGCGTTTTAACGGCAg < 1:37600202/67‑1 (MQ=255) aGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAc > 1:32824017/1‑68 (MQ=255) GGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAca < 1:14397401‑M1/67‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcag < 1:8524501‑M1/67‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcag < 1:2055728‑M1/67‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAca > 1:31168‑M1/1‑66 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAca > 1:13508932‑M1/1‑66 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc > 1:19161899‑M1/1‑68 (MQ=255) tatcagcgagtttgatctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGccc < 1:3493127‑M2/39‑1 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc < 1:39423656‑M1/66‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:27906139/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:15321403/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:10181551/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:42630436/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:45167454/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:34333769/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:42137897/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:26388729/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:6105231/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:39105837/68‑1 (MQ=255) gaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTcc > 1:50634276/1‑68 (MQ=255) agcgagtttgatctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGACCAGCCAGCCCTTcc > 1:5889507‑M2/26‑68 (MQ=255) tCAAACTCGCTGATATGCCGGCAACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCa < 1:6548073/67‑1 (MQ=255) tCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCa > 1:26608984/1‑67 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:44704790/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:9599140/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:46941807/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:33923176/1‑68 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:43240250/1‑67 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:20140205/1‑67 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:12249936/1‑67 (MQ=255) cGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcg < 1:51150035/68‑1 (MQ=255) gCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcgg < 1:24081402/68‑1 (MQ=255) tGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGgcggcg > 1:16448012/1‑68 (MQ=255) tGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGgcggcg > 1:11286488/1‑68 (MQ=255) atatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:45573193/68‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:25783388/67‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:48082843/67‑1 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:4428146‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:35416187‑M2/10‑67 (MQ=255) tgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:22994721‑M2/9‑66 (MQ=255) gccgcccACGGTATGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:22743833‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGGGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:10920376‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACCGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:15171682‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:29948297‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:18051031‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:48947111‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:49885797‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:7321074‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:29473781‑M2/8‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:14709578‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt < 1:36833809‑M2/63‑1 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:26950670‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:21125654‑M2/6‑68 (MQ=255) cccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc > 1:28588733‑M2/4‑68 (MQ=255) ccAGGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc > 1:33141568‑M2/3‑67 (MQ=255) ccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTAGCTTTTc > 1:21514979‑M2/3‑67 (MQ=255) cACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGc < 1:3868832‑M2/67‑1 (MQ=255) aCGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGc > 1:1169627/1‑67 (MQ=255) | CATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719547‑719680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |