| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 753865 = | NA (NA) | 6 (0.020) | 5/72 | NT | 100% | noncoding (1/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | CP009273 | 2298212 = | 0 (0.000) | noncoding (317/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 1109 total aligned reads displayed.
GGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTA > CP009273/753798‑753931 | ggCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTa > 1:46444533/1‑68 (MQ=255) cgttggatgtcggatgcggcgtaaccgccttatcaaacctacggggtgcagcacttcacggcggtGTa < 1:42452541‑M1/3‑1 (MQ=255) tggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAgg > 1:33866152‑M1/63‑67 (MQ=255) tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAgg < 1:21261385/67‑1 (MQ=255) tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAgg < 1:18385154/67‑1 (MQ=255) tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAgg < 1:27767809/67‑1 (MQ=255) tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGc < 1:20006963/68‑1 (MQ=255) tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGc < 1:39905454/68‑1 (MQ=255) ggatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAgg < 1:29100519‑M1/5‑1 (MQ=255) gAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGcc < 1:14675147/68‑1 (MQ=255) gatgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGgccg < 1:47674159‑M1/8‑2 (MQ=255) aaCCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAgg > 1:33322423/1‑65 (MQ=255) atgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCt > 1:42142529‑M1/60‑67 (MQ=255) tgtgggatgcggcgtaaccgcgttatccaacctacggggtggtgcacttcacagcggtGTAGGCCTGa > 1:48505725‑M1/59‑68 (MQ=255) tgtcggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGa > 1:13106986‑M1/59‑68 (MQ=255) cccGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGa > 1:34444019/1‑68 (MQ=255) ggatgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAg < 1:32284736‑M1/14‑1 (MQ=255) aCGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:3418328/1‑68 (MQ=255) aCGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:17999724/1‑68 (MQ=255) aCGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:18782270/1‑68 (MQ=255) gatgcggcgtaaccgccttataaaacctacggtgtggagcacttcaaagcgctGTAGGCCAGAtaac < 1:49100476‑M1/14‑2 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:2398465/1‑67 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:22755689/1‑67 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg < 1:51275380/67‑1 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAg > 1:8409214/1‑67 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGa < 1:36708240/68‑1 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGa < 1:10673563/68‑1 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAAAGTAATGCGTAAACCGTAGGCCTGATAAg > 1:3936250/1‑67 (MQ=255) gcgcgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAc < 1:11282935/68‑1 (MQ=255) gcgcgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAc < 1:2169687/68‑1 (MQ=255) atgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAc < 1:37685676‑M1/16‑1 (MQ=255) atgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAc < 1:2741646‑M1/16‑1 (MQ=255) tgcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAcg > 1:4576626‑M1/52‑68 (MQ=255) gcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATGAGAcgc < 1:22197949‑M1/18‑1 (MQ=255) gcggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAcgc > 1:2330995‑M1/51‑68 (MQ=255) gcggcgtaaccgccttatccaacctacggggtggagcacttcacagcgggGTAGGCGTGTTaagaaca < 1:50804221‑M1/18‑4 (MQ=255) tccATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTATGCCTGATAAGAcgcg < 1:6096364/66‑1 (MQ=255) ggcgtaaccgccttatcctacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAcgcg > 1:50358145‑M1/49‑67 (MQ=255) ggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAcgcg > 1:19356907‑M1/49‑67 (MQ=255) ggcgtaaccgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGAcgcg > 1:5703618‑M1/49‑67 (MQ=255) gcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcgcg < 1:41497695/67‑1 (MQ=255) gcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcgcg < 1:48107330/67‑1 (MQ=255) accgccttatccaacctacggggtggagcacttcacagcggtGTAGGCCTGATAAGACGCGCAAgcc < 1:687523‑M1/25‑2 (MQ=255) cATATGAAGGCGAGGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGc < 1:26845810/68‑1 (MQ=25) cATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGc < 1:15744301/68‑1 (MQ=255) tCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa > 1:7182921/1‑68 (MQ=255) cAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg > 1:19746219/1‑68 (MQ=255) cAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 1:9160190/68‑1 (MQ=255) cAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg > 1:33045877/1‑68 (MQ=255) cAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg > 1:28719239/1‑68 (MQ=255) ccaacctacggggtggagcacttcacagcggtGTAGGACTGATAAGACGCGCAAGCGTCGCATCAGGc < 1:20903756‑M1/36‑1 (MQ=255) gTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATGCGACGCTTGCGCGTGGTATCAGGcc > 1:45280547/1‑67 (MQ=16) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:170578/1‑67 (MQ=255) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:44660450/1‑67 (MQ=255) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:46996268/1‑67 (MQ=255) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:34970989/1‑67 (MQ=255) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:6316082/1‑67 (MQ=255) tCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCa > 1:29958466/1‑67 (MQ=255) cGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCaa < 1:16516714/67‑1 (MQ=255) cGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCaa < 1:28186506/67‑1 (MQ=255) acctacggggtggagcacttcacagcggtGTAGGCCTGa > 1:9601016‑M1/30‑39 (MQ=255) gttgttGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGt < 1:36313780/68‑1 (MQ=255) gttgttGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGt < 1:31143741/68‑1 (MQ=255) gttgttGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGt < 1:3037010/68‑1 (MQ=255) gttgttGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGt > 1:14304630/1‑68 (MQ=255) ttgttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGt > 1:41070530/1‑67 (MQ=255) tgttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTg < 1:38923033/67‑1 (MQ=255) tgttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTg < 1:8682082/67‑1 (MQ=255) tgttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGc < 1:29468757/68‑1 (MQ=255) tgttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGc < 1:15106636/68‑1 (MQ=255) gttgCAACGTAATGGGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCACATCAGGCAACCAGTGcc > 1:49893137/1‑68 (MQ=255) tgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCgg > 1:16183478/1‑68 (MQ=255) tgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCgg > 1:13822410/1‑68 (MQ=255) tgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCgg > 1:12036259/1‑68 (MQ=255) cGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcg > 1:37159918/1‑68 (MQ=255) cGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcg > 1:31969295/1‑68 (MQ=255) cGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcg > 1:49322097/1‑68 (MQ=255) aaTGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcggcg > 1:35944726/1‑68 (MQ=255) tGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTg > 1:32765552/1‑68 (MQ=255) gCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGa > 1:2354836/1‑68 (MQ=255) gCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGa > 1:11628838/1‑68 (MQ=255) cGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGa > 1:35532644/1‑67 (MQ=255) gTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAAc > 1:10125979/1‑68 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCGTCAGGCAACCAGTGCCGGATGCGGCGTGAACGc < 1:42932050/68‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:31738006/67‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:25897846/67‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:17510848/67‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:12647080/67‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:44228434/67‑1 (MQ=255) aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACg < 1:25441713/67‑1 (MQ=255) aCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCt > 1:7513368/1‑68 (MQ=255) aCCGTAGGCCTGATAAGACGCCCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACCCCt > 1:20331865/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:24375654/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:4388605/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:43465565/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:41807672/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:7884855/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:2468255/1‑68 (MQ=255) ccGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 1:38325059/1‑68 (MQ=255) cGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTa > 1:40597289/1‑68 (MQ=255) | GGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTA > CP009273/753798‑753931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |