| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776472 | 802 (1.300) | 75 (0.180) | 3/76 | NT | 19.1% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 777109 = | 90 (0.210) | intergenic (+1/‑432) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
Only 100 of 1278 total aligned reads displayed.
GTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGC > CP009273/776405‑776539 | gtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCA < 1:29048730‑M1/68‑1 (MQ=255)gtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCA < 1:17638567‑M1/68‑1 (MQ=255)gtAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCA < 1:39801796‑M1/68‑1 (MQ=255) aGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCcaccac < 1:943656/67‑1 (MQ=37) aGGATAACGTTGCGAGAGAAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAat < 1:13735529‑M1/68‑3 (MQ=255) aGGAAAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCcaccac < 1:27176978/67‑1 (MQ=255) gATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTaa > 1:42536029/1‑68 (MQ=255) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACtttt > 1:43102581/1‑65 (MQ=255) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTa < 1:25305167/66‑1 (MQ=40) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTa < 1:6439515/66‑1 (MQ=40) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTa < 1:5696237/66‑1 (MQ=40) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAAt > 1:4413246/1‑68 (MQ=255) aaCGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATg > 1:37560432/1‑67 (MQ=255) aCGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTATTGAc > 1:30268010/1‑68 (MQ=255) aCGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGAc < 1:15600488/68‑1 (MQ=255) cGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACg < 1:36447474/68‑1 (MQ=255) cGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACg < 1:7418931/68‑1 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACGACTAATGACgg > 1:26095424/1‑68 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgt > 1:27506127/1‑67 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:1272559/1‑68 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATAACgg > 1:77372/1‑68 (MQ=255) gTTGCATGAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:23347692/1‑68 (MQ=255) gCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTgg < 1:45734253/68‑1 (MQ=255) ggcAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt < 1:2165040/66‑1 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTACTGACGGTGGGt < 1:24767733/68‑1 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt < 1:19065011/68‑1 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt < 1:31469099/68‑1 (MQ=255) gTCAGCAAAGGCCCGTATGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt < 1:10657276/68‑1 (MQ=255) aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTg < 1:11104631/68‑1 (MQ=255) aCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTgg > 1:29780148/1‑68 (MQ=255) cccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATAATTACGGTGGGGGCGGTGGaact > 1:18335206/1‑66 (MQ=17) ccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagt < 1:26619024/67‑1 (MQ=255) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:36016965/68‑1 (MQ=255) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:8443693/68‑1 (MQ=255) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:21102903/68‑1 (MQ=255) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:35195605/68‑1 (MQ=255) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:34784495/68‑1 (MQ=255) cGTAAGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTTATGACGGTGGGTTCGGTGGAagtag < 1:47375112/68‑1 (MQ=255) aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGttt < 1:37927517/68‑1 (MQ=255) aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGttt < 1:28284633/68‑1 (MQ=255) ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt > 1:8825154/1‑68 (MQ=255) ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt > 1:19649607/1‑68 (MQ=255) gcgaggtaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:42229907/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgta > 1:49290790/1‑68 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:48729536/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:33280937/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:47040361/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:32245796/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:5330126/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:12178391/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:27893206/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:25659213/67‑1 (MQ=255) cgagcgaAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgct < 1:40157668‑M1/67‑35 (MQ=255) gagcgaAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctat < 1:14081936‑M1/68‑37 (MQ=255) gagcgaAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctat < 1:6995360‑M1/68‑37 (MQ=255) gagcgaAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgcta < 1:30596396‑M1/67‑36 (MQ=255) gagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgtagt < 1:20095576/68‑1 (MQ=255) agcgaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgtagta > 1:37076630/1‑68 (MQ=255) gctaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTAt < 1:23762765/65‑1 (MQ=255) gcgacgcgaGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctat < 1:49744268‑M1/66‑37 (MQ=255) cgaagcgaGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctatct > 1:13165118‑M1/1‑29 (MQ=255) gaagcgaGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctatctg < 1:51060768‑M1/67‑40 (MQ=255) gaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTAt < 1:44515352/66‑1 (MQ=255) gaagcgaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTAt < 1:16731966/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:20269194/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:41077864/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:38787846/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:34113788/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:35662363/66‑1 (MQ=255) ttCATCCTTCACGACGAAACACTAATTACCGGGTGTTCTTTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:28727624/67‑1 (MQ=255) gaTCCTTCACTACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgcgctg < 1:4493851/65‑3 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:50375837/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:32697058/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:43609971/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGt < 1:39354503/67‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGt < 1:41522210/67‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTa < 1:46648821/68‑1 (MQ=255) cATCCTGCACGACCCACCACTAAAGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:6077446/66‑1 (MQ=255) aTCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttgctatcagcgatactcaaa > 1:14529483‑M1/1‑18 (MQ=255) tCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:33836746/60‑1 (MQ=255) tGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGAGCAGTATCggg > 1:22929154/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa < 1:45420663/68‑1 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:22053278/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGAATCCAGCGCAGTATCGGGTGa > 1:30951668/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTGCGGTGGAAGTAGGTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:48208789/1‑68 (MQ=38) aCCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTa > 1:40560632/1‑68 (MQ=255) cacTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAg < 1:1714668/68‑1 (MQ=255) cacTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAg < 1:11511049/68‑1 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:41852793/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:24171561/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:32059336/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:38419520/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:16231963/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:46248730/1‑66 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:2926566‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:47753607‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:14935124‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:20755430‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:36798831‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttgctatctgcgatactcaaagattcgaacctgcagca > 1:10168464‑M1/1‑1 (MQ=255) | GTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGC > CP009273/776405‑776539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |