| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776472 | 802 (1.300) | 75 (0.180) | 3/76 | NT | 19.1% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 777109 = | 90 (0.210) | intergenic (+1/‑432) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
Only 100 of 503 total aligned reads displayed.
CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > CP009273/777043‑777176 | aggataacgttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaAt > 1:38133784‑M2/67‑68 (MQ=255)aggataacgttgcggcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaAt < 1:6017056‑M2/2‑1 (MQ=255) gataacgttgcggcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaAt < 1:29203195‑M2/2‑1 (MQ=255) ataacgttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaatct < 1:42648085‑M2/4‑3 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTTAAAACGCGCCAAAGAGGCGCTTGTTTg > 1:13362698‑M2/37‑68 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAATCGCACAAGAGGAGCTTTTTtgg > 1:33593227‑M2/36‑67 (MQ=255) aTTGGTCGCAGGTTCTAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGc < 1:7375441/68‑1 (MQ=18) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:37243184/1‑68 (MQ=35) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGACCTAAAGGCGCTTTTTTGCTa > 1:11968012/1‑68 (MQ=25) cgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCt < 1:45656151‑M2/34‑1 (MQ=255) cgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCt < 1:40157668‑M2/34‑1 (MQ=255) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:14431840/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:6236253/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:7851367/68‑1 (MQ=35) gagcgcagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa < 1:25390082‑M2/35‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:39659088‑M2/36‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:41702006‑M2/36‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:27502133‑M2/36‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:29832672‑M2/36‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:6578215‑M2/36‑1 (MQ=255) gagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:20146991‑M2/36‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:46562860/1‑65 (MQ=35) tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:16269052/1‑65 (MQ=35) gcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATc < 1:31611681‑M2/37‑1 (MQ=255) cgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt > 1:15348020‑M2/30‑67 (MQ=255) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:15835599/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:10086565/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:10832196/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:38637596/67‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:50661321/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:35351617/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:3419609/1‑68 (MQ=35) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:49450562/1‑68 (MQ=35) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:2081509/1‑68 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:40429273/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:34863312/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:8769137/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:47105285/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:4344084/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:102886/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:2408756/66‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:29534475/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:9278460/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:28933594/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:31892089/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:7499361/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:37809784/67‑1 (MQ=35) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCaaa > 1:16554237‑M2/19‑68 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCaaa > 1:46137609‑M2/19‑68 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCaaa > 1:37589573‑M2/19‑68 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCGATCTGCGATACTCaaa > 1:49834969‑M2/19‑68 (MQ=255) tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAg < 1:20547000‑M2/68‑2 (MQ=255) tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAg < 1:7002347‑M2/68‑2 (MQ=255) tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAg < 1:28170707‑M2/68‑2 (MQ=255) tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAg < 1:36950150‑M2/68‑2 (MQ=255) ccTGCACGACCCACCAATGTAAAAAAGCTCGCTAAAGGCGCTTTATTGCTATCTGCGATACTCAAAga < 1:301968‑M2/68‑3 (MQ=255) ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAga < 1:26375363‑M2/68‑3 (MQ=255) ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAga < 1:21924065‑M2/68‑3 (MQ=255) cTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgat > 1:19511224‑M2/1‑65 (MQ=255) cTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgat > 1:32766177‑M2/1‑65 (MQ=255) cACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcg < 1:11476649‑M2/68‑7 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:47758737‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:48235655‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:43534538‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:2113346‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:22619346‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcga < 1:28872045‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCAGCGATACTCATAgattcga < 1:48767915‑M2/68‑8 (MQ=255) aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATATGCGATACTCAAAgattcga < 1:9475511‑M2/68‑8 (MQ=255) cGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaa > 1:36274063‑M2/1‑60 (MQ=255) gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaa < 1:23249181‑M2/67‑9 (MQ=255) aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaa < 1:21578079‑M2/66‑9 (MQ=255) aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaa < 1:4453245‑M2/66‑9 (MQ=255) aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaa < 1:4304819‑M2/66‑9 (MQ=255) aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCGGCGATTCTCAAAgattcgaa < 1:49007085‑M2/66‑9 (MQ=255) cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaacct > 1:44224502‑M2/1‑57 (MQ=255) cccACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaacct > 1:39050319‑M2/1‑57 (MQ=255) ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAgattcgaacctg > 1:47490938‑M2/1‑56 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:30726461‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:32305874‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:1234915‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:9719998‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:12843307‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:33865352‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:13911447‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:26769347‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:17220916‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:5392552‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:51077930‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:17699066‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:35792012‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:18898430‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:41292537‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:3680674‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:24804815‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:1977782‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:24482916‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:45254799‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:44883316‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:23632087‑M2/2‑68 (MQ=255) | CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > CP009273/777043‑777176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |