| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776704 | 677 (1.090) | 105 (0.180) +AAC |
6/106 | NT | 14.1% | intergenic (+26/‑121) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | = 777108 | NA (NA) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
Only 100 of 1105 total aligned reads displayed.
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776637‑776771 | tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAg < 1:30302460/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGc < 1:21112840/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCACTTTTAACATCAAACGAAGATGTTAAggtt > 1:33647696/1‑65 (MQ=14) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGc < 1:8904527/64‑1 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGa < 1:49439313/68‑1 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAg < 1:344328/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:22850166/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:11658558/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:45868201/68‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:26738448/65‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGAt < 1:40881976/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAGTTTTAACATCAATCTCAGATGATAAGCGTGAAGGATAACGTTcc > 1:35579806‑M1/1‑66 (MQ=255) tCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:50438232/57‑1 (MQ=255) tCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTgcg < 1:20159528/68‑1 (MQ=255) aTCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAg > 1:39807275‑M2/1‑67 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAgc > 1:18855458‑M2/1‑66 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAgc > 1:5984378‑M2/1‑66 (MQ=255) tCCTGCACGACCCACCAGTTTTAAAATCAAACGCAGATGGTAAGGTTGAAGGATAACGTTGCGCCAgc < 1:42112456‑M2/68‑3 (MQ=255) ccTGCACGACCCACCAGTTTTAACATCGAAGTCAGATGTTAAGCGTGAAGGATAACG > 1:19669973‑M1/1‑57 (MQ=255) cACGACCCACCAGTTTTAAAATCAAACTCAGATGTTAAGCGTGAAGGTTAACGTTGCGCCAgcaacg < 1:41394134‑M2/67‑7 (MQ=255) actacccacccGTTTTAACATCCAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:29373486/64‑1 (MQ=17) aCGACCCACCAGTTTTAAGATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:1075277/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:5671819/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:26994944/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:27604901/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:42752563/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:16911902/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATAAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGACCGCAACgga > 1:36419185/1‑67 (MQ=17) aCGACCCAACATTTTAAACATCAAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:37056771/67‑1 (MQ=14) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:43076952/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:6369108/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:3276174/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:32337151/68‑1 (MQ=255) gACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGccc < 1:13869632/68‑1 (MQ=255) gACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGccc < 1:11308954/68‑1 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:3824306/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:9613961/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:18065878/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:20601183/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:21475307/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:15551042/1‑68 (MQ=255) cccACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:24406424/65‑1 (MQ=255) accaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAgg < 1:31246966/68‑1 (MQ=255) ccaGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAggg < 1:13461010/68‑1 (MQ=255) ccaGTTTTAACATCAAACTCAGATGTAAACCGTGAAGGATAACGTTGCGCCACCAACGGCCCGTAggg < 1:48008206/68‑1 (MQ=18) cacgTTTTAACATCCAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAggg < 1:29950071/65‑1 (MQ=14) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:31796511/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:35043334/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:14754254/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:12781259/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:12307398/1‑68 (MQ=255) gTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcga > 1:47336405/1‑68 (MQ=255) tttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcgagc > 1:34047138/1‑68 (MQ=255) tttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcgagc > 1:15800130/1‑68 (MQ=255) tttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcgag < 1:6785696/67‑1 (MQ=255) tttAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg < 1:19254538/65‑1 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagc > 1:43732999/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagc > 1:25195029/1‑68 (MQ=255) tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:28039074/68‑1 (MQ=255) aaaCTCAGATGTTAAGCGGGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGt < 1:5303390/68‑1 (MQ=255) aCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa > 1:41775378/1‑68 (MQ=255) aCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa > 1:28936557/1‑68 (MQ=255) cgcAGATGATAAGCGAGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:15216365/66‑1 (MQ=14) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:38740611/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:50768034/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:17316590/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:23165777/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:22319795/68‑1 (MQ=255) tCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:28386935/1‑67 (MQ=255) tccatgtTAAaaatggtgcctcgtgcaggattcgaacctgcgaccaattgattcaaagtcaactgctc < 1:47763585‑M1/65‑59 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:23539817‑M1/68‑61 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:30620865‑M1/68‑61 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:33232301‑M1/68‑61 (MQ=255) gATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt > 1:46575170/1‑67 (MQ=40) gATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt > 1:12049896/1‑67 (MQ=40) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:28713671‑M1/1‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:48820424‑M1/1‑7 (MQ=255) tGTTAAaactggtgggtcgtgcaggattcgaacctgagaacaattgattaaatgacaactgctatacc > 1:48249253‑M1/1‑6 (MQ=255) tGTTAAaactggtggggcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacc < 1:44863239‑M1/68‑63 (MQ=255) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:1030817/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:2192828/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:46249637/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGc > 1:51184076/1‑67 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGc > 1:45198868/1‑67 (MQ=40) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:18325767‑M1/1‑5 (MQ=255) gTTAAaaatggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca < 1:1007926‑M1/68‑64 (MQ=255) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCa > 1:7889354/1‑67 (MQ=40) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:50011185/1‑68 (MQ=40) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:24806110/1‑68 (MQ=40) ttAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaact < 1:44595763‑M1/58‑55 (MQ=255) tAAGCGTGAAGGATAACGTTGCGCCCGCAACGGCCCGTATGGCGAGCGAAGCGAGTCATCCTGCACGa < 1:37680404/68‑1 (MQ=14) aaaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaact < 1:8398770‑M1/68‑67 (MQ=255) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGa > 1:39230513/1‑67 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:40473206/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:16387463/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:30995139/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:720670/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:25760525/68‑1 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:14375744/1‑67 (MQ=40) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:440935/1‑67 (MQ=40) | TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776637‑776771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |