New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =262 (0.420)15 (0.030) 9/88 NT 6.8% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 521 total aligned reads displayed.

CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA  >  CP009273/1685560‑1685694
                                                                   |                                                                   
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:44946187‑M1/1‑1 (MQ=255)
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:38278438‑M1/1‑1 (MQ=255)
 tgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgaa                                                                    <  1:33921265‑M1/2‑1 (MQ=255)
 aTGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCA                                                                     <  1:41086717‑M1/67‑1 (MQ=255)
  gttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     >  1:34474463‑M1/66‑66 (MQ=255)
      tGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACG                                                                >  1:16274516‑M1/1‑67 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                              <  1:29156356‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                              <  1:1350840‑M1/8‑1 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                              <  1:48104898‑M1/8‑1 (MQ=255)
          aaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCGga                                                           <  1:30707139‑M1/11‑1 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:32056338‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:25443913‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:50186030‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:19115970‑M1/1‑68 (MQ=255)
           tGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAG                                                          <  1:29847425‑M1/68‑1 (MQ=255)
           tGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAG                                                          <  1:21518059‑M1/68‑1 (MQ=255)
           agcCAGCTCTTAACGGTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAG                                                          <  1:29904788‑M1/67‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGTCCAAAACGCCGGAGAAt                                                       <  1:25922606/68‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                        <  1:47630689/67‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                        <  1:22424939/67‑1 (MQ=255)
                 ctctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAttt                                                     >  1:47234/1‑67 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAtt                                                      <  1:9665727/65‑1 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc                                                   >  1:50722161/1‑68 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTc                                                   >  1:41480779/1‑68 (MQ=255)
                       aCGTTCCGGCTGTATCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:33817245‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:2868178‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:23814249‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:45931981‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:13816089‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTAACAcc                                              >  1:4902673/1‑68 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:27538138‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:37435945‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:43637027‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:5988851‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGCAGAATTTTCActccg                                             <  1:10158588‑M2/68‑6 (MQ=255)
                         gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                            >  1:809560‑M2/1‑62 (MQ=255)
                           tCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggc                                           >  1:39406053‑M2/1‑60 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                       <  1:18822492‑M2/67‑12 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCCCGGCCAAACCGCCGGAGAATTTTCActccggcgttttgg                                    >  1:39281598‑M2/1‑54 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                    >  1:13134053/1‑65 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                  <  1:12221868/67‑1 (MQ=255)
                                         cAATTCCGCTGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:48313791/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:49651162/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:867327/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:3099214/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:11331829/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:15645970/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:26267919/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCAGCTGaaa                             >  1:11728688/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACGCCGGCGTTTTCATCTGaaa                             >  1:15365493/1‑67 (MQ=255)
                                          gcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaac                           <  1:8974717‑M1/43‑1 (MQ=255)
                                           aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                          >  1:10471625/1‑68 (MQ=255)
                                            ttCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                         <  1:9104632/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:12554387/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:24321012/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:17921415/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:31407600/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                       <  1:4439423/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        >  1:36666914/1‑67 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCAATCCGGCGTTTTCATCTGAaaacaaac                       >  1:218913/1‑68 (MQ=255)
                                               ctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAcc                      <  1:37276771‑M1/48‑1 (MQ=255)
                                               cGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAcc                      <  1:1292923/68‑1 (MQ=255)
                                               cGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTCCATCTGAAAACAAAcc                      <  1:398470/68‑1 (MQ=255)
                                                gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttttggccgtgaattactgct                     >  1:43260161‑M2/1‑39 (MQ=255)
                                                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   >  1:46547725/1‑68 (MQ=255)
                                                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   >  1:45352816/1‑68 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                <  1:7435678‑M1/54‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  <  1:28173977/66‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   <  1:14528566/65‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   <  1:6923199/65‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   <  1:25036290/65‑1 (MQ=255)
                                                        aaTTCACGGCCAAACCGCCGGAGAATTTTCACTACGGCGTTATCATCTGAAAACAAACCAGAGATTGc             <  1:42266167/68‑1 (MQ=255)
                                                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              <  1:21014143/67‑1 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGtgaaaattctccggcgttttggccgtgaattactgctgcggaattg            >  1:14152150‑M1/1‑21 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGtgaaaattctccggcgttttggccgtgaattactgctgcggaattg            >  1:35454326‑M1/1‑21 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                       <  1:41657428/56‑1 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:10994551/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:50005087/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:43988402/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:30181758/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTATCATCTGAAAACAAACCAGAGATTg              >  1:19554831/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGAGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:38878566/1‑65 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGtgaaaattctccggcgttttggccgtgaattactgctgcggaattgcc          >  1:27102236‑M1/1‑20 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg          >  1:36285758/1‑68 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg          >  1:32759573/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt        >  1:42613952/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt        >  1:40340448/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt        >  1:16942156/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt        >  1:5384003/1‑68 (MQ=255)
                                                              cGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATg       <  1:35752894/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:34736784/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:35284314/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:34159173/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:3788134/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:25125399/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:20017712/68‑1 (MQ=255)
                                                               gatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:48677466‑M1/64‑1 (MQ=255)
                                                                 ccAAAACGCCGGAGtgaaaattctccggcgttttggccgtggattactgctgcggaattgccggtaca    >  1:43126511‑M1/1‑14 (MQ=255)
                                                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg     <  1:26713410/67‑1 (MQ=255)
                                                                   AAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTa  >  1:23188494‑M1/1‑68 (MQ=255)
                                                                   |                                                                   
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA  >  CP009273/1685560‑1685694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.