New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =262 (0.420)15 (0.030) 9/88 NT 6.8% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 525 total aligned reads displayed.

CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726
                                                                   |                                                                   
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:21702591/1‑68 (MQ=255)
   gcatcaggcaatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCa                                                                    <  1:37387317‑M2/2‑1 (MQ=255)
   gcatcaggcaatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATc                                                                  <  1:48677466‑M2/4‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:29949842/1‑65 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                                                    >  1:13134053/1‑65 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:32920736/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:44808408/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             <  1:26267919/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:10718263/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:11011165/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:88073/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:29148727/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:7287161/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:15645970/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:4392503/1‑67 (MQ=255)
           aTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaaca                                                          >  1:10471625/1‑68 (MQ=255)
            ttCCGCAGCAGAAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                                                         <  1:3930140/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:7770815/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:24013037/68‑1 (MQ=255)
              tctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAaaacaaac                                                       <  1:2189995‑M2/15‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:4439423/68‑1 (MQ=255)
              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                                                       <  1:47179843/68‑1 (MQ=255)
               ctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCtgaaaacaagcc                                                      <  1:30565695‑M1/48‑4 (MQ=255)
                tctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCa                                                     <  1:28287325‑M1/49‑1 (MQ=255)
                tctggattgttttcagatgaaaacgccggcgtgaaatttccccggcgttttCATCTGAaaacaaac                                                       <  1:12577953‑M2/15‑1 (MQ=255)
                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   >  1:45352816/1‑68 (MQ=255)
                     tttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAACCAgaga                                                 <  1:16303125‑M2/21‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:35599245/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:26590015/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:34853704/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:25036290/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                >  1:41202677/1‑68 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGTGTTTTCATCTGAAAACAAACCAGAGACTg                                              <  1:49841053/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:19474668/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:38929689/67‑1 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:43098059/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:31033744/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:4269132/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:42334562/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:50005087/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:5148122/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt                                           <  1:48365746/68‑1 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt                                           <  1:4208358/68‑1 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:26973592/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:8988310/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:37334182/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:14488975/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:16942156/1‑68 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:2329179/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:49505534/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:36307274/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:35284314/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:29880167/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:5836295/68‑1 (MQ=255)
                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg                                     <  1:12109857/67‑1 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:2113611‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:17602800‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:46284004‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:3171868‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:46768583‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:41635518‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:2532203‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:33679014‑M1/1‑68 (MQ=255)
                                     AACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 <  1:11647071‑M1/67‑1 (MQ=255)
                                     AACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 <  1:30247838‑M1/67‑1 (MQ=255)
                                     AACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 <  1:46052784‑M1/67‑1 (MQ=255)
                                      ACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGACAACAACCCAGAGATTGCCTGATGCGCTAc                                 <  1:18893132‑M1/66‑1 (MQ=255)
                                      ACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAGCAAACCAGAGATTGAATGATGCGCTAc                                 <  1:47697511‑M1/66‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              <  1:40012758‑M1/68‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              >  1:20914575‑M1/1‑68 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:36705772‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:50450853‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:44175163‑M1/1‑67 (MQ=255)
                                              GAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAg                        <  1:4815447‑M1/67‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       >  1:22901086/1‑66 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:835295/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:19770045/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:3258387/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:36859909/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGc                      <  1:36209070/67‑1 (MQ=255)
                                                  tttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGcgt                    >  1:18089955/1‑65 (MQ=255)
                                                  tttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCt                    >  1:36025055/1‑67 (MQ=255)
                                                   ttCACTCCGGCGTTTTCTTCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:32063807/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:14915561/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:43746257/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:39594373/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAc                  <  1:48916693/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:40718708/1‑68 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtttt             >  1:9423722‑M2/12‑68 (MQ=255)
                                                        tccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:34070820‑M2/12‑67 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCtttt             >  1:24515371‑M2/11‑67 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:1350840‑M2/60‑1 (MQ=255)
                                                                tttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAac     >  1:28135861‑M2/4‑68 (MQ=255)
                                                                tttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAac     >  1:27472290‑M2/4‑68 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:38278438‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:6874852‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:12277722‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:30907677‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAac     >  1:34474463‑M2/2‑66 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  <  1:10140961/68‑1 (MQ=255)
                                                                   |                                                                   
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.