| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 570 (0.920) | 23 (0.050) | 10/92 | NT | 5.2% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 371 (0.730) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 732 total aligned reads displayed.
CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 | atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgcg > 1:3480513/1‑68 (MQ=255) ttacaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCgg < 1:18333544‑M1/3‑1 (MQ=255) catgctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:44151257‑M1/63‑68 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:29452387/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:26748613/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:38751439/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:8403421/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:36106453/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAg < 1:13720499/68‑1 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAg < 1:46491713/68‑1 (MQ=255) gTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTCAATTTTTCTGCCTGCGTGCGGGCa > 1:49696595/1‑66 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:16505014/67‑1 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:35033556/67‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:30712056‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:38506486‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:3178861‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:14770860‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:45016747‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:49268433‑M1/6‑1 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:25968782‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:18802201‑M1/59‑66 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:10800873/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:10039866/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTg < 1:24638551/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:43067765/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:5922100/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:5569253/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:39993900/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:32603898/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:41483384/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:27361655/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:51268369/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:17164082/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:447898/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:17913183/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:48173505/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:22084275/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:16235141/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGTGCAGCTGTTtg > 1:48719856/1‑68 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:9121932/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:19216090/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:33033284/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:8128361/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:31426319/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:7242075/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt > 1:6603663/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:17669692/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:21068656/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:20222355/68‑1 (MQ=255) aTCGTTAAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgtg < 1:30973244/68‑1 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:41051851/1‑67 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:375084/1‑67 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:9672372/1‑67 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:12332853/1‑67 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:34412512/1‑67 (MQ=255) ttAAGGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:35472570/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:23193685/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:11303267/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:46045514/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:289037/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:39514848/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:19674285/68‑1 (MQ=255) ttAACGCCACGCCGGGTGCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:12988933/67‑1 (MQ=255) tAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCAc < 1:41953895/68‑1 (MQ=255) acgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGAAGCTGTTTGTGTATCACTa > 1:23795010/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1397683/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt < 1:21464994/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:47448390/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:33530776/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:12754201/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt < 1:9455284/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:50734018/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:6848349/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:42688227/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:42379570/1‑68 (MQ=255) cacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGc < 1:47033162/68‑1 (MQ=255) cacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGc < 1:28265307/68‑1 (MQ=255) gccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGa > 1:40498531/1‑67 (MQ=255) ccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATc > 1:20506597/1‑68 (MQ=255) tttCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTTTGTATCACTAATGCGATCGAg < 1:24384262/66‑1 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAg < 1:43785254/67‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:11038730/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc > 1:11694943/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:24207436/68‑1 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:3800931/1‑68 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:27884650/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:50917307/68‑1 (MQ=255) gccgcaaccgaccattagttttgcCGGGGAGCTGTTTGTGTATGACTAATGCGATCGAGCGCGGCGt < 1:6294001‑M1/43‑1 (MQ=255) cgcaaccgaccattagttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCa < 1:25333367‑M1/46‑1 (MQ=255) agTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCa > 1:7660239/1‑68 (MQ=255) tCTGCCGGCGGGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGCGCGCGGCGTGCAGCTGCCCgca < 1:22629072/68‑3 (MQ=255) gcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATAGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:30437361/1‑68 (MQ=255) cctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:30014609/1‑67 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:47656726‑M1/59‑1 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:45465110‑M1/59‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:15591265/1‑66 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:36878292/68‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:34208475/68‑1 (MQ=255) ttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:50266592‑M1/62‑1 (MQ=255) tgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCTAAACTAATg > 1:15112856/1‑68 (MQ=255) | CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |