| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2845465 = | 356 (0.580) | 29 (0.050) | 11/96 | NT | 6.8% | coding (243/273 nt) | hypC | hydrogenase maturation protein |
| ? | CP009273 | 2845525 = | 487 (0.920) | coding (31/1122 nt) | hypD | hydrogenase maturation protein | |||||
Only 100 of 639 total aligned reads displayed.
TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 | ttAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTC > 1:5059739‑M1/1‑68 (MQ=255) tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCG > 1:35064361‑M1/1‑68 (MQ=255) tAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCG > 1:50473049‑M1/1‑68 (MQ=255) aTGAAGCCGAAGCACGCGACACTCTCGACGCCGTACACAACTTGTTTGACGTTGAGCCGGATGTCGGC < 1:12602102‑M1/68‑1 (MQ=255) tGAAGCCGAAGCACGCGCCACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:18346122‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:28999266‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:26361098‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:44250932‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:18574393‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:46832090‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:5835421‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:40168177‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:39067929‑M1/1‑67 (MQ=255) tGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC > 1:38291864‑M1/1‑67 (MQ=255) taagCGGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC < 1:19715394‑M1/67‑1 (MQ=255) gcggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc < 1:17413571‑M1/6‑1 (MQ=255) gAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC < 1:36004141‑M1/68‑1 (MQ=255) cggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgc > 1:14006573‑M1/62‑67 (MQ=255) aaGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:13513235‑M1/1‑67 (MQ=255) ggtgtaagagagatgtgaagcacgttcgcgcagatgctcaattaactgcatcacctgttcCGgcgcgc < 1:39626114‑M1/8‑1 (MQ=255) aGCCGAAGCACGCGACACTCTCGACGCCTTACAACACATGTTTGACGTTGAGCCGGATGTCGGCGCG < 1:44830369‑M1/67‑1 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:8060007‑M1/1‑65 (MQ=255) gCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTAACGTTGAGCCGGATGTCGGCGC > 1:21405778‑M1/1‑65 (MQ=255) ccGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGC > 1:5403018‑M1/1‑64 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:25507493/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:27058204/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:4271280/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt > 1:9435566/1‑68 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:42345733/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:41627287/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:30507642/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:45195963/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:7468683/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:1314615/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:6530640/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:6103373/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:5620180/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:19040411/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:486753/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgt < 1:45588733/68‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:29397137/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:47932408/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:8745531/66‑1 (MQ=255) cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCt < 1:33665319/66‑1 (MQ=255) gCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTa > 1:43835228/1‑68 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:41993536/1‑68 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:6949154/1‑68 (MQ=255) cACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTAt > 1:36797546/1‑68 (MQ=255) cacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg < 1:24883570/67‑1 (MQ=255) cacTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAg < 1:34445710/67‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:1776193/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGa < 1:32578245/68‑1 (MQ=255) acTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGAGCGCTGTTGTATGGCGAGGa > 1:10859722/1‑68 (MQ=255) ctcGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGaaaa > 1:10209452/1‑68 (MQ=255) cGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAaat > 1:4103733/1‑68 (MQ=255) ccTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGc > 1:14947251/1‑68 (MQ=255) ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGt < 1:43322248/68‑1 (MQ=255) aCAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGttt > 1:35441294/1‑68 (MQ=255) aCAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGttt > 1:32047815/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:894542/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:46668866/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt < 1:31370836/68‑1 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:34808778/1‑68 (MQ=255) aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgt > 1:24286545/1‑68 (MQ=255) aaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgtt < 1:46535064/68‑1 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:22485420/1‑68 (MQ=255) aCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTttgttg > 1:29938653/1‑68 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCTGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:38757933/68‑1 (MQ=255) cATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtga < 1:23545902/68‑1 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatg < 1:27509386/68‑1 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatg < 1:12256473/68‑1 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTtgatg < 1:16169070/68‑1 (MQ=255) tGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGG‑AAAATAATGCGTTTTGTtgatga > 1:20083178/1‑68 (MQ=255) tttGACGTTGAGCCGGATGTCGGCGAGCTGTTGTATGTCGAGGAAAAATAATGCGTTTTGTTGATTaa > 1:15280564/1‑68 (MQ=255) gACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAata > 1:20719715/1‑67 (MQ=255) ctgcatcacctgttcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc < 1:26807217‑M1/52‑1 (MQ=255) cGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATc > 1:156964/1‑67 (MQ=255) gTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc < 1:44052643‑M2/68‑3 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:4594053‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:11852427‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:14333240‑M2/1‑63 (MQ=255) gAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg > 1:50971569‑M2/1‑63 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:3317114‑M2/68‑8 (MQ=255) gCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgcc < 1:27789348‑M2/68‑8 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccg > 1:16711324‑M2/1‑59 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:28595613/68‑1 (MQ=255) cGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCgg < 1:49446396/68‑1 (MQ=255) gATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAat < 1:37631021/54‑1 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:33350364/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:11245275/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:28130041/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:26147476/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAAc > 1:45720501/1‑68 (MQ=255) aTGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCG‑TTTGTTGATGAATATCGCGCGCCGGAACa > 1:32839006/1‑68 (MQ=255) tGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACa > 1:30891145/1‑68 (MQ=255) tcCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:21825067‑M1/66‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:14700341/68‑1 (MQ=255) gTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAg < 1:4068441/68‑1 (MQ=255) cCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAgg < 1:38628006‑M1/67‑1 (MQ=255) cGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccg > 1:23428954‑M1/1‑8 (MQ=255) | TTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGT > CP009273/2845398‑2845532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |