New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3256491 =768 (1.240)33 (0.070) 13/90 NT 5.2% coding (529/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
?CP009273 3256545 = 598 (1.200)coding (475/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic

Only 100 of 1045 total aligned reads displayed.

TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGT  >  CP009273/3256478‑3256611
                                                                   |                                                                  
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                 <  1:13723158/67‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:37883651/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:17795776/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                >  1:47285607/1‑68 (MQ=255)
     gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               >  1:22609546/1‑68 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                               <  1:13007167‑M2/6‑1 (MQ=255)
     atacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                               <  1:15196859‑M2/6‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:10847709/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:31266123/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:32169632/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:21812529/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:45095503/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:18214411/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:46048144/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:46534800/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:48217039/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                               <  1:50413968/67‑1 (MQ=255)
       gCGACGTGCCGTGGAAACCATAACGGCGTACGCCTAAATCTGCATAATATTTCCACGCCAGGCCGttt                                                             >  1:14668240/1‑66 (MQ=255)
       acggccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGgccggat                                                             <  1:1198162‑M1/62‑4 (MQ=255)
       acggccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtat                                                             <  1:42989945‑M1/62‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:30871102/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:10014683/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                            <  1:20938987/67‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataa                                                           >  1:22973098/1‑68 (MQ=255)
          gccTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTGGCACGGCAGGCCGTataaa                                                          <  1:49896754‑M1/65‑1 (MQ=255)
           cGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaat                                                         >  1:7445046/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTgtaaata                                                        >  1:22132471/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                        >  1:32468514/1‑68 (MQ=255)
                cgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGTATAAATAAGCt                                                    <  1:4416249‑M2/17‑1 (MQ=255)
                CGTGGAAACCATCACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    >  1:33162123‑M1/1‑68 (MQ=255)
                CGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    >  1:25135426‑M1/1‑68 (MQ=255)
                 GTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                    <  1:7896372‑M1/67‑1 (MQ=255)
                   GGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTcc                                                 >  1:43106464‑M1/1‑68 (MQ=255)
                   GGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAAGAAGCTTcc                                                 <  1:34024970‑M1/68‑1 (MQ=255)
                     AAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTACgg                                               <  1:34305743‑M1/68‑1 (MQ=255)
                        ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAg                                             >  1:12181164/1‑67 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       <  1:9483332/68‑1 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:24498842/1‑68 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:297075/1‑67 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:38799821/68‑1 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:4112542/68‑1 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                      <  1:41477033/68‑1 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:18647885/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:49231210/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:37609573/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:36716843/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:39970919/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:16067667/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                       >  1:8296562/1‑66 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg                                  <  1:28806235/68‑1 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtgg                                  <  1:38409153/68‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggtg                                >  1:50750838/1‑68 (MQ=255)
                                     cacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggtgg                               >  1:49041350/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:21518200/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:51027839/1‑68 (MQ=255)
                                       ccTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGaa                             >  1:46938532/1‑68 (MQ=255)
                                          aaCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCATCCGGAGCCATCGTCTGGTGGAAACt                          <  1:36462633/68‑1 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:25886585/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:20131446/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:7147156/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:28317017/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                         >  1:44457784/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAACCTTCCGGAGCCATCGTCTGGTCGAAACTg                         >  1:30127113/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:35919576/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:32935976/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                        >  1:27715707/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:14292064/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:39355232/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:40393603/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:1261508/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:24105840/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:11433055/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:26538638/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:43542902/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       <  1:27094803/68‑1 (MQ=255)
                                             tctTCATAATATTACCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                       >  1:26409143/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                      >  1:11207635/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                      >  1:16627615/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                      >  1:4561769/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                      >  1:23501913/1‑68 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:6464332/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                     <  1:34603375/68‑1 (MQ=255)
                                                   taataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaaa                 >  1:20528662/1‑68 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:8783725/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:40809486/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                >  1:13313294/1‑67 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc             >  1:48773128/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc             >  1:37087064/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc             >  1:35158983/1‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc          >  1:5702124‑M2/10‑68 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         >  1:42005950‑M2/8‑67 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa         >  1:5311713‑M2/8‑67 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAc        <  1:35579390‑M2/61‑1 (MQ=255)
                                                               ggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTg     >  1:1984451‑M2/5‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:31645135‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:29207870‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:1560103‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:19065351‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa    >  1:17250495‑M2/4‑68 (MQ=255)
                                                                  aGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAg   <  1:24943162‑M2/66‑1 (MQ=255)
                                                                   |                                                                  
TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGT  >  CP009273/3256478‑3256611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.