| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 7 (0.010) | 4/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 986 total aligned reads displayed.
CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 | cGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:30139177‑M2/67‑1 (MQ=255) cGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:13570275‑M2/67‑1 (MQ=255) ggCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGc < 1:10879605/68‑1 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCaa > 1:50594056/1‑68 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa < 1:27302281/67‑1 (MQ=255) cttaaaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:35383699/65‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt > 1:10020610/1‑68 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:39955397/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:18056360/68‑1 (MQ=255) aaaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGt < 1:9694195/68‑1 (MQ=255) aaaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGt < 1:6502706/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:24253287/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:21014617/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:3379453/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:38100532/1‑68 (MQ=255) acaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt > 1:39408024/1‑68 (MQ=255) tAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACg > 1:13125350/1‑67 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:29390181/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:24543382/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCGTACGCATCGGGCAATTGTATTTACGcc < 1:47372540/68‑1 (MQ=255) aaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAt > 1:34019306/1‑68 (MQ=255) aaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAt > 1:32014785/1‑68 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg > 1:6352731/1‑68 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:28600504/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:29825445/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:44624792/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:13900169/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:23126392/68‑1 (MQ=255) tAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCa < 1:23826441/68‑1 (MQ=255) aaaTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCaa > 1:32728135/1‑68 (MQ=255) tccGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTTCTCCATTGTCCCAATCGTCtt < 1:31108091/67‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc > 1:5316348/1‑57 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:19063348/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTACCAATCGTCt > 1:22601717/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCGTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:36300375/1‑67 (MQ=255) gcgcAGACCCTATAAGCT‑ACGCATCGGtgcaatttattgaattttagttgtttttaggccggataagg > 1:19949052‑M2/1‑27 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCACTCGTCTTCCTGac < 1:41020451/68‑2 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:18600847/68‑1 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc < 1:12119403/68‑1 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:21569147/1‑68 (MQ=255) gTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:26957302/1‑68 (MQ=255) tCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca > 1:35109071/1‑67 (MQ=255) cccTATAAGCTTACGCATCTGGCAATTGTATTTACTCCATTGTCCCAATCGTCATCCTGAATCgcagc > 1:35863473/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:37620486/1‑67 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgca < 1:33475835/66‑1 (MQ=255) ccTATAAGCTTACGCATCGGGCAATTGTATTTACTCCATTGTCCCAATCGTCTTCCTGAATCgcagca < 1:47715122/68‑1 (MQ=255) tataAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:25796/68‑1 (MQ=255) tataAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:12792209/68‑1 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGGCATTGTCCCATTCGTCTTCCTGAATCGCAGCAgcgc > 1:10376624/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:43749421/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:11507402/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:14604621/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:43403056/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:2212399/1‑68 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:31498710/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:28389058/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:1505776/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:5943520/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:19449531/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:3857963/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:7504022/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:26499622/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:9051258/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGGCTTCCTGAATCGCAGCAGCGCaa > 1:30736048/1‑68 (MQ=255) cTTAGGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:25350473/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:49338306/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:39547324/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:4590195/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:406650/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:42525234/1‑68 (MQ=255) attACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:36715878/2‑68 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCatt < 1:50939336/66‑3 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:16998595/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:32377633/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:34583289/68‑1 (MQ=255) tACGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccc > 1:20549702‑M2/1‑10 (MQ=255) tACGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccc > 1:6878460‑M2/1‑10 (MQ=255) tACGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacc < 1:26045670‑M2/67‑58 (MQ=255) tACGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacc < 1:48982213‑M2/67‑58 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccc > 1:15776037‑M2/1‑9 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccc > 1:4999877‑M2/1‑9 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:46566887/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:47058980/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:47968201/1‑68 (MQ=255) cATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaa < 1:16514198‑M2/68‑63 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:45338569/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:8198828/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:48442334/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:42852996/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:4213285/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:37323821/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:41543225/1‑68 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaaa > 1:14268065/1‑68 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:8611708‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:28012751‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:1727648‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:44198342‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:2888305‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:25020752‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:3322491‑M2/67‑64 (MQ=255) | CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |