New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 64557545 (0.880)34 (0.070) 10/94 NT 6.3% coding (1224/2352 nt) polB DNA polymerase II
?CP009273 = 64577 560 (1.080)coding (1204/2352 nt) polB DNA polymerase II

Only 100 of 852 total aligned reads displayed.

TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644
                                                                   |                                                                   
tACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     >  1:12085116/1‑68 (MQ=255)
 aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:21251586‑M2/1‑67 (MQ=255)
     gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:27137144‑M2/68‑6 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:19683627‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:18953879‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:44613452‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:28621924‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:40677962‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:38474976‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:47736552‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:39295167‑M2/68‑7 (MQ=255)
      cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:17728083‑M2/68‑7 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg                                                              >  1:21795823‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg                                                              >  1:8632966‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg                                                              >  1:12737571‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:24804075‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:18593245‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:43331949‑M2/1‑61 (MQ=255)
       ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:23851508‑M2/1‑61 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTgg                                                          <  1:2961511/68‑1 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:16188315/1‑67 (MQ=255)
           ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:24441302/1‑67 (MQ=255)
           ataGGCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGGGAATCCATCACGTAGCCGCCAGGGCTgg                                                          <  1:7670818/68‑1 (MQ=255)
            taGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGc                                                         <  1:22084574/68‑1 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttat                                                        >  1:33687852‑M2/1‑55 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGc                                                         >  1:46600090/1‑67 (MQ=255)
             aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:45991366/1‑68 (MQ=255)
               tCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGt                                                       >  1:3030220/1‑67 (MQ=255)
                ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:48559086/1‑68 (MQ=255)
                     accagcacTGAATCATCCCGCCCTGGCCGGGAATCCATCACGTAGCCgccagggctttaagattcagt                                                >  1:23022885‑M2/1‑47 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagt                                                >  1:40206040‑M2/1‑47 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:25632104/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:58384/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:30583472/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:11271091/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:37307261/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:42462677/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:48198150/1‑67 (MQ=255)
                     accagcacTGAATCATAAAGCCCTGGCCGTGAATCAATCACGTAGCCGCCAGGGCTGGCGTtcggcg                                                 >  1:32800498/1‑67 (MQ=255)
                       cagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCa                                              <  1:13040544/68‑1 (MQ=255)
                          cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:33388413/1‑67 (MQ=255)
                          cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:51251661/1‑67 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttatgattcagtgctggt                                          >  1:36238881‑M2/1‑41 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:12393356/1‑68 (MQ=255)
                           acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          <  1:29169810/68‑1 (MQ=255)
                                agcatAACGCCCTGGCCGTCAATCCATCACGTAGCCgccagggctttatgattcagtgctggtgctgg                                     >  1:15067171‑M2/3‑36 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:26475751/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:16540825/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:32225265/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     <  1:820278/68‑1 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:7330778/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGAGGCGGCACTTCGCCga                                     >  1:34551419/1‑68 (MQ=255)
                                aTCATAAAGCCCTGGCCGTGAAGCCATCACGGAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:47432162/1‑68 (MQ=255)
                                aTCATAAAGCCCTGCCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     <  1:6642797/68‑1 (MQ=255)
                                  cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:49182918/68‑1 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTGGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:10005504/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:34941833/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:31412315/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:50808458/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:27602433/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:15894949/1‑68 (MQ=255)
                                     aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACATCGCCGAGATTa                                >  1:6147966/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:50236583/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:2995600/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:25319947/1‑68 (MQ=255)
                                        gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:2349392/1‑68 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:36693566/1‑67 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:18514652/1‑67 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:42050570/1‑67 (MQ=255)
                                         cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTGCGCCGAGATTAGgc                             >  1:17949914/1‑67 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:22448474/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:46968488/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:11638023/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:28201842/1‑68 (MQ=255)
                                          ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:34127640/1‑68 (MQ=255)
                                           cTGGCCGGCAATCCACCACGTACCCgccagggctttatgattcagtgctggtgctggactataaaagc                          >  1:21509305‑M2/1‑25 (MQ=255)
                                            tGGCCTTGAATCCATCACGTAGCCGCCATGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:41137680/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:14286887/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:35219626/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:19363758/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:43098656/68‑1 (MQ=255)
                                            tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:41444895/68‑1 (MQ=255)
                                            tGGCCGAGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:44334505/68‑1 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:9182412/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:7030875/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:9641567/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:45015572/1‑68 (MQ=255)
                                               ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:14619874/1‑68 (MQ=255)
                                                cGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATa                     <  1:49812462/68‑1 (MQ=255)
                                                     aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:45350987/1‑67 (MQ=255)
                                                     aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAg                <  1:39845246/68‑1 (MQ=255)
                                                          tCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGa           >  1:16977863/1‑68 (MQ=255)
                                                           cACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:10668283/1‑68 (MQ=255)
                                                            aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:43697967/1‑67 (MQ=255)
                                                             cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGc        >  1:25891832/1‑68 (MQ=255)
                                                             cGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGc        >  1:210029/1‑68 (MQ=255)
                                                              gTAGCCGCAAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATCACCAGCGCGAAGCa       >  1:35719747/1‑68 (MQ=255)
                                                                aGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCAt      >  1:2041531/1‑67 (MQ=255)
                                                                 gccgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCTTTc    >  1:37896017/1‑68 (MQ=255)
                                                                   cgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTcgc  <  1:13577012/68‑1 (MQ=255)
                                                                   |                                                                   
TACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64510‑64644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.