| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 483 (0.780) | 2581 (6.870) +CGTTTTTTTGGATGGAGGAATT |
52/68 | NT | 87.9% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 686 (1.110) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 5400 total aligned reads displayed.
GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAA > CP009273/3509206‑3509340 | ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaa < 1:11985960‑M2/68‑3 (MQ=255) ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:46056012‑M2/1‑66 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt < 1:23673020‑M2/67‑5 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:27328279‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:13398564‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta > 1:7507798/1‑68 (MQ=255) atcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctcca < 1:6004619‑M2/68‑11 (MQ=255) atcaAGCAGGGGATACTTGCCCC‑TGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctcca < 1:3771771‑M2/67‑11 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat > 1:13797944‑M2/1‑57 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat < 1:20385785‑M2/67‑12 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat < 1:36795310‑M2/67‑12 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGActaactaa < 1:7987784/68‑1 (MQ=255) aaGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAt < 1:41049038/68‑1 (MQ=255) cAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaa < 1:6962355‑M2/68‑17 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTac > 1:23188839/1‑67 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:48681054‑M2/67‑20 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:4141778‑M2/67‑20 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:43198306‑M2/67‑20 (MQ=255) ggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACAcc < 1:17155146/67‑1 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaac < 1:17643860‑M2/68‑22 (MQ=255) aTACTTGCCCCCTGCCCCCTTCAAAAAAGCGAGATTTTTATTCATGaattcctccatccaaaaaaacg < 1:18999580‑M2/68‑23 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:24607163/67‑1 (MQ=255) tACTTGCCCCCTGCCCTCTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgg > 1:28233933‑M2/1‑45 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:363690‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:9006458‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:25070190‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:43661238‑M2/1‑44 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt > 1:33076002‑M2/1‑43 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:10003184‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:38568918‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:1140953‑M2/68‑26 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:35451780‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:40762720‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:14638337/1‑67 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:37195313/1‑67 (MQ=255) gCCCCCTGCCCACTTCATAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatt > 1:4654002‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:45063686‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:1090720‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg < 1:12486137‑M2/68‑29 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:27797974‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:44068526‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:19956424‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:42789908‑M2/68‑31 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag < 1:10473809‑M2/68‑32 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag > 1:29785481‑M2/1‑37 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:29229627‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:8413162‑M2/68‑33 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:45529908‑M2/1‑35 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:49516399‑M2/1‑35 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:16144272‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:3591298‑M2/1‑33 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag > 1:26468918‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:5028243‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:4460614‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:47871272‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:9560877‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:3444623‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:18073827‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:31668534‑M2/1‑31 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:34007527‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:14206855‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:49931221‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:3940658‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:40238881‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:26050921‑M2/1‑30 (MQ=255) aCTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAg < 1:22385834/68‑1 (MQ=255) ttCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCt < 1:22795928/68‑1 (MQ=255) ttCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCt < 1:34928939/68‑1 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:18546674‑M2/1‑25 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:30308963‑M2/1‑25 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:6439117‑M2/1‑25 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:30719402‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:15114044‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:38981850‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:21404324‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:32093925/1‑68 (MQ=255) aGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagatccagtagagagttgcg < 1:21875773‑M2/68‑50 (MQ=255) aGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcg < 1:33478805‑M2/68‑50 (MQ=255) gcgATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcga > 1:15597344‑M2/1‑16 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:31273620‑M2/1‑10 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:20951388‑M2/1‑10 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:49146092‑M2/1‑10 (MQ=255) ttcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcg > 1:48280498‑M2/1‑9 (MQ=255) ttcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcg > 1:16556121‑M2/1‑9 (MQ=255) tcttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgt > 1:39808909‑M2/1‑8 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:241358‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca < 1:19434948‑M2/68‑63 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca < 1:28672259‑M2/68‑63 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca < 1:51100923‑M2/68‑63 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:544874‑M2/1‑6 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:47409387‑M2/1‑5 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:46971714‑M2/1‑5 (MQ=255) caagCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAgg < 1:12931194/65‑1 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:50628622‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:38099974‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:32633390‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:25542292‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:26901145‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:42290767‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:41891055‑M2/1‑4 (MQ=255) | GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAA > CP009273/3509206‑3509340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |