New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =515 (0.830)41 (0.080) 16/90 NT 7.1% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 656 (1.320)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 1116 total aligned reads displayed.

AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800
                                                                  |                                                                  
agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc                                                                    <  1:21722127/67‑1 (MQ=255)
 ggATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg                                                                  >  1:6145788/1‑68 (MQ=255)
 ggATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg                                                                  >  1:50433605/1‑68 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc                                                                   <  1:12337773/65‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc                                                                   <  1:22040999/65‑1 (MQ=255)
    tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag                                                               <  1:23304247/68‑1 (MQ=255)
    gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                <  1:17297372‑M1/66‑1 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:12580756‑M1/1‑68 (MQ=255)
      gctgcgccgccggtgatcggctactgtgcggtaacgggggagttcgatagcggcgcagcgCCGgaga                                                              >  1:48025859‑M2/61‑67 (MQ=255)
        TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg                                                           <  1:31238867‑M1/68‑1 (MQ=255)
        TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg                                                           <  1:13020041‑M1/68‑1 (MQ=255)
         GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          >  1:5146213‑M1/1‑68 (MQ=255)
         GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          >  1:43135076‑M1/1‑68 (MQ=255)
           GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa                                                         >  1:23039033‑M1/1‑67 (MQ=255)
             CGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCa                                                      >  1:7108264‑M1/1‑68 (MQ=255)
              GCTATAGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGCAGAGCGAACCaa                                                     <  1:49646957‑M1/68‑1 (MQ=255)
                      aCTCTCCGGTTACCGCAGAGTTGCCGATCAGCGGCGGCGCTGCGCCGGAGAGCGAACCAATCAACGt                                              <  1:20935319/67‑1 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:29001774/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:27297410/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:20165359/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:26089321/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:17779987/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:820994/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:11304458/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:38524813/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATAAACGt                                              >  1:38202564/1‑67 (MQ=255)
                       cTCACGGGTTACCGCACTGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:34047130/68‑1 (MQ=255)
                       cTCACCGGTTACCGCAGAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:39036354/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:29705614/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:31576360/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:49223788/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:34769464/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:3696748/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:2833920/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:27651048/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:39943646/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:41613899/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:44388547/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:7752424/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:14276346/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:1515904/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:26530221/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:46292150/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:11686013/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:6579036/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:22431028/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:47664213/68‑1 (MQ=255)
                         cACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCg                                          <  1:42183734/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:50032578/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:39441627/68‑1 (MQ=255)
                               ttACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGAc                                     <  1:300549/67‑1 (MQ=255)
                                 aCCTCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCTATCAACGTGCCGTAGACaga                                  <  1:41091278/68‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:19510296/68‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:10642173/68‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:47168888/68‑1 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:48488823/68‑1 (MQ=255)
                                    gCACAGTAGCCGGTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:18886503/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:33797715/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:35823593/1‑68 (MQ=255)
                                    gCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:42738673/1‑68 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:16119556/1‑67 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:40750571/1‑67 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:2127271/1‑68 (MQ=255)
                                      aaccggtgagaccgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             <  1:35223542‑M2/40‑1 (MQ=255)
                                      aaccggcgacttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             <  1:36233818‑M2/40‑1 (MQ=255)
                                          ggtgagttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:874693‑M2/44‑1 (MQ=255)
                                           aGCCGATCACCGTCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:46591698/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:18369140/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:24090203/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:45525837/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:36564837/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc                        >  1:27898298/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       >  1:37841983/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       <  1:32441209/66‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt                      <  1:16876444/67‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:25660971/1‑68 (MQ=255)
                                               gttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     <  1:24473808‑M2/48‑1 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:32088077/68‑1 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:2503425/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:15701632/1‑67 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:930457/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:1000752/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:26782092/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:10389913/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:13959938/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:23679186/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:45806679/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:30405294/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:33232476/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:37416677/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:43756295/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:44914248/68‑1 (MQ=255)
                                                      ggcggcGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCt             <  1:51021015/68‑1 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               >  1:10842940‑M2/12‑65 (MQ=255)
                                                        cggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            <  1:28760138‑M2/57‑1 (MQ=255)
                                                              agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg      <  1:30948008‑M2/63‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCg   >  1:5782072‑M2/2‑67 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:20491283‑M2/67‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:19106436‑M2/67‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:13369440‑M2/67‑1 (MQ=255)
                                                                  |                                                                  
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.