| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 678193 | 262 (0.420) | 13 (0.030) | 7/94 | NT | 5.5% | coding (657/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription |
| ? | CP009273 | = 678254 | 231 (0.440) | coding (596/1671 nt) | hscC | Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription | |||||
Only 100 of 268 total aligned reads displayed.
GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACG > CP009273/678187‑678320 | ggCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGt < 1:7553587/68‑1 (MQ=255) cGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGTAAGTtt < 1:47927897‑M2/68‑3 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:24222807‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:39628219‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:12366328‑M2/1‑63 (MQ=255) cATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcg > 1:45125310‑M2/1‑63 (MQ=255) ccGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgcca > 1:18276601‑M2/1‑60 (MQ=255) gcgcgTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGc < 1:44884447/68‑1 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:5213820‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacg > 1:45613569‑M2/1‑52 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAgg < 1:10349235/67‑1 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAgg < 1:43515883/67‑1 (MQ=255) tttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAgg < 1:8456248/67‑1 (MQ=255) ttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCg < 1:13693143/68‑1 (MQ=255) ttAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCg < 1:25489905/68‑1 (MQ=255) tAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacgct > 1:35886487‑M2/1‑50 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:13886890/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:46809788/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:3110326/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:32925586/68‑1 (MQ=255) aCCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAAc < 1:35932888/68‑1 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTc < 1:16290319/68‑1 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTc < 1:134464/68‑1 (MQ=255) tCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTc < 1:33904444/68‑1 (MQ=255) aTCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCaa < 1:26603377/68‑1 (MQ=255) tCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAAt > 1:42211326/1‑68 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCa < 1:36604955/68‑1 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCa < 1:19785103/68‑1 (MQ=255) gACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCa < 1:11016569/68‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCGAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:3840356/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgt < 1:27318596/68‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:9938330/65‑1 (MQ=255) atatGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:28159350/65‑1 (MQ=255) atatGGGGAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCgg < 1:30399521/65‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:2601874/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:27905652/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:40558545/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:34597348/68‑1 (MQ=255) atGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtgg < 1:32710507/68‑1 (MQ=255) atGGGTAAAATCTTCCCCACCAACAAAGTggccgccaggaccacgcttaacgagagtgaactggcagc > 1:37296788‑M2/1‑29 (MQ=255) atGCGAAAAATCTTCGCCACCAAGAAAGTtgtcgccaggaccacgcttaacgagagtgaactggcagc > 1:29900895‑M2/1‑29 (MQ=255) tGGGTAAAATGTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:28873441/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:10095026/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:50521331/68‑1 (MQ=255) tGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:7113583/68‑1 (MQ=255) tGGGTAAAATCTTCCCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggc < 1:34303460/68‑1 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:20647874/1‑68 (MQ=255) ggTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:46313893/1‑68 (MQ=255) ggTAAAATATTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgt > 1:29016411/1‑68 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:14868825/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:21090852/67‑1 (MQ=255) tAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTa < 1:21915532/67‑1 (MQ=255) tAAAAACTTCGCCCCCAAGAAAGTAGGCGCCAGCGGAGGCGTGAACTTCAATCACCggcgtggcgtc < 1:50137657/67‑2 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:4660686/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:16722204/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:17459209/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:48106747/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18024162/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:50824040/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:44396413/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:7390444/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:44197031/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18557191/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:18677029/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:14107034/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:40951787/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:27851522/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:35093773/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:33757093/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:33347908/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACt < 1:40878743/68‑1 (MQ=255) aaaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGGGGCGTACt < 1:28745986/68‑1 (MQ=255) aaaTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTc < 1:12047156/68‑1 (MQ=255) aaaGCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTc < 1:45712877/68‑1 (MQ=255) aTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa > 1:6633860/1‑68 (MQ=255) aTCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCaa < 1:32136240/68‑1 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAg < 1:6146943/68‑1 (MQ=255) tCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTAAATCACCGGCGTGCCGTCCTCaa > 1:24387870/1‑67 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:22249357/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:314713/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:49238997/68‑1 (MQ=255) cTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGc < 1:20310154/68‑1 (MQ=255) ttCGCCACCAACAACGTtgccgccaggaccacgcttaacgagagtgaactggcagccttgtacgcctg > 1:48580618‑M2/1‑17 (MQ=255) ttCCCCACCAAGAAAGTTGTCGCCAGCGGAGGCTTGAACTTCAATCACCGGCGTGGCGTACTCAAGCa < 1:47977988/68‑1 (MQ=255) cGCCACCAAGAAATTTGTCGCCAGCGGAGGAGTGAAATTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:1697666/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:5704649/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:8547604/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:36795957/68‑1 (MQ=255) cGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCAcc < 1:2213595/68‑1 (MQ=255) ccaccaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGt > 1:16013658/1‑68 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:3620557/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:39218835/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:43192422/68‑1 (MQ=255) accaAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTaa < 1:42651889/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:30896171/68‑1 (MQ=255) caAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:19356272/68‑1 (MQ=255) caAGAAAGTTGGCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACg < 1:23150146/68‑1 (MQ=255) aaGTTGTCGCCAGCGGAGGGGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTTACGTCaa > 1:47592177/1‑67 (MQ=255) aGTTGTCGCCAGCGGAGGCGTGAACTTCACTCCCCGGCGTGGCGTACTCAAGCCCCGTAACGTCAAAc > 1:929335/1‑68 (MQ=255) gTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACg > 1:31213590/1‑68 (MQ=255) | GGCGACATCCGCGCGTTTTAAAACCTCATCGACCAGCATATGGGTAAAATCTTCGCCACCAAGAAAGTTGTCGCCAGCGGAGGCGTGAACTTCAATCACCGGCGTGGCGTACTCAAGCACCGTAACGTCAAACG > CP009273/678187‑678320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |