New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1821389431 (0.700)20 (0.040) 10/94 NT 5.6% coding (1128/1344 nt) astB succinylarginine dihydrolase
?CP009273 = 1821423 310 (0.600)coding (1094/1344 nt) astB succinylarginine dihydrolase

Only 100 of 450 total aligned reads displayed.

GTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTAATCGGGTT  >  CP009273/1821356‑1821490
                                                                   |                                                                   
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     >  1:49439613/1‑68 (MQ=255)
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     >  1:33936214/1‑68 (MQ=255)
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     >  1:11988399/1‑68 (MQ=255)
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     >  1:33713505/1‑68 (MQ=255)
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     <  1:24775287/68‑1 (MQ=255)
gTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGc                                                                     >  1:13990568/1‑68 (MQ=255)
  tcatcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCac                                                                   >  1:18563082‑M2/1‑66 (MQ=255)
    atcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgc                                                                 >  1:7370610‑M2/1‑64 (MQ=255)
     tcatcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgcc                                                                <  1:9817678‑M2/68‑6 (MQ=255)
      catcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccg                                                               >  1:32113619‑M2/1‑62 (MQ=255)
      catcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccg                                                               >  1:18155370‑M2/1‑62 (MQ=255)
       atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                                                              <  1:40845536‑M2/68‑8 (MQ=255)
       atcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                                                              <  1:1291446‑M2/68‑8 (MQ=255)
        tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCaggccgg                                                              <  1:22198091‑M2/67‑8 (MQ=255)
        tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                                                              <  1:21675761‑M2/67‑8 (MQ=255)
        tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                                                              <  1:22999585‑M2/67‑8 (MQ=255)
        tcaCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgg                                                              <  1:50252574‑M2/67‑8 (MQ=255)
         caCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgggc                                                            >  1:48955189‑M2/1‑59 (MQ=255)
          aCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCACCCGCAGGCACGCCGGgcc                                                           >  1:31161909/1‑68 (MQ=255)
          aCCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgcc                                                           >  1:24981138/1‑68 (MQ=255)
           ccgccgGATTCACCGCCCGGCGTTCTTCTTCTGTCCATACCACCCGCAACCGCAGGCACGCCGGgcc                                                           >  1:8440328/1‑67 (MQ=255)
           ccgccgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgcc                                                           >  1:29652123/1‑67 (MQ=255)
             gccgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCacgccgggcggtg                                                        >  1:45178645‑M2/1‑55 (MQ=255)
             gccgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgcc                                                        <  1:42435073/68‑1 (MQ=255)
               cgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccgc                                                      <  1:20601444/68‑1 (MQ=255)
               cgGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccg                                                       >  1:10703036/1‑67 (MQ=255)
               cgGATTCACCGCCCGGCGGTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccg                                                       >  1:3321404/1‑67 (MQ=255)
                ggATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGgccgccgcc                                                     <  1:9194835/68‑1 (MQ=255)
                  aTTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCAt                                                   >  1:50544322/1‑68 (MQ=255)
                   tgcacCGCCCGGCGTTCTTCTTCAGTCAATACCACCCGCAACCGCCGGCacgccgggcggtgaatccg                                                  >  1:46336365‑M2/3‑49 (MQ=255)
                    tCACCGCCCGGCGTTCTTCTTCTGTCAATACCCCCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc                                                 >  1:31712599/1‑68 (MQ=255)
                    tCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc                                                 <  1:34404288/68‑1 (MQ=255)
                     cACCGCCCGGCGTTCTTCTTCTGTCAATACCAGCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTc                                                 >  1:40295431/1‑67 (MQ=255)
                        cGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCa                                             >  1:12448118/1‑68 (MQ=255)
                        cGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCa                                             <  1:6563537/68‑1 (MQ=255)
                         gCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCAt                                            <  1:32498037/68‑1 (MQ=255)
                         gCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCAt                                            <  1:43485419/68‑1 (MQ=255)
                           ccGGGGTTATTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:23577565/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCAt                                            >  1:6127995/1‑66 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:41140178/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:36995435/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:30389441/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:25995451/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGc                                          <  1:6765724/68‑1 (MQ=255)
                           ccGGCGTTCTTCTTCTGTCAATACCACCCCCAACCGCAGGCacgccgggcggtgaatccggcggtga                                           >  1:38759751‑M2/1‑41 (MQ=255)
                              gCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCta                                        >  1:45650099/1‑66 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTc                                      >  1:28650998/1‑67 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTc                                      >  1:2540067/1‑67 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTc                                      >  1:51152851/1‑67 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTc                                      >  1:17713262/1‑67 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCa                                     <  1:28193759/68‑1 (MQ=255)
                                gTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCa                                     <  1:25740634/68‑1 (MQ=255)
                                  tcttcttctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCAc                                    <  1:47482256/67‑1 (MQ=255)
                                     tcttctGTCAATACCACCCGCAACCGCAGGCCCGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTaa                                >  1:8266415/1‑68 (MQ=255)
                                     tcttctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTaa                                >  1:10126937/1‑68 (MQ=255)
                                     tcttctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTaa                                >  1:38234286/1‑68 (MQ=255)
                                       ttctGTCATTAACACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAAt                              <  1:6931131/68‑1 (MQ=255)
                                       ttctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTaaa                               >  1:13725167/1‑67 (MQ=255)
                                       ttctGTAAATACCAGGCGCAACCGCAGGCACGCCGGGCCGCCGCCAATCGCCATGCTTTCACGTAAAt                              <  1:48121372/68‑1 (MQ=255)
                                        tctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATc                             >  1:43059559/1‑68 (MQ=255)
                                        tctGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATc                             >  1:39241706/1‑68 (MQ=255)
                                          tGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCaa                           >  1:22102900/1‑68 (MQ=255)
                                          tGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCaa                           >  1:5255566/1‑68 (MQ=255)
                                          tGACAATACCACCCGCAACCGCAGCCccgcccggcggtgaacccggcggtgatgatgaacgatacgct                           >  1:36238420‑M2/1‑26 (MQ=255)
                                            tCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGC‑TTCAAGTAAATCAAAg                         >  1:13189445/1‑67 (MQ=255)
                                             cAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGa                        <  1:35784165/68‑1 (MQ=255)
                                              aaTACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGAc                       <  1:19362747/68‑1 (MQ=255)
                                               aTACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACt                      <  1:37320491/68‑1 (MQ=255)
                                               aTACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACt                      >  1:44600430/1‑68 (MQ=255)
                                                tACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtt                     <  1:7818268/68‑1 (MQ=255)
                                                tACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtt                     >  1:33092869/1‑68 (MQ=255)
                                                tACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtt                     >  1:17077959/1‑68 (MQ=255)
                                                tACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtt                     >  1:26240911/1‑68 (MQ=255)
                                                 accaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACttt                    >  1:29096991/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:14705691/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:968752/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:15000397/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:8964043/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:1557912/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:1630745/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:20976915/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:27709554/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:45131937/1‑68 (MQ=255)
                                                  ccaccCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACtttt                   >  1:47013378/1‑68 (MQ=255)
                                                    accCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAg                 >  1:2404141/1‑68 (MQ=255)
                                                      ccccACCCGCAGGCacgccgggcggtgaatccggcggggatgatgaacgatacgctgtttaatgcgct               >  1:37927375‑M2/1‑14 (MQ=255)
                                                      ccccACCCGCAGGCacgccgggcggcgaatccggcggtgatgatgaacgatacgctgtttaatgcgct               >  1:19930270‑M2/1‑14 (MQ=255)
                                                      ccGCAACCGCAGGCacgccgggcggtgaatccggcggtgatgatgaacgatacgctgtttaatgcgct               >  1:40525078‑M2/1‑14 (MQ=255)
                                                      ccGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCCCGTAAATCAAAGACTTTTAGt                >  1:5775004/1‑67 (MQ=255)
                                                      ccGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGt                >  1:27309010/1‑67 (MQ=255)
                                                      ccGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGt                >  1:50984072/1‑67 (MQ=255)
                                                      ccGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTATTAGt                >  1:30866297/1‑67 (MQ=255)
                                                          aaCCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAATTCAAAGACTTTTAGTTCGCt           <  1:11399184/68‑1 (MQ=255)
                                                          aaCCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCt           <  1:44280742/68‑1 (MQ=255)
                                                          aaCCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCt           <  1:42132605/68‑1 (MQ=255)
                                                          aaCCCCAGGCccgccgggcggtgaatccggcggtgatgatgaacgatacgctgtttaatgcgctcaat           >  1:11052548‑M2/1‑10 (MQ=255)
                                                           aCCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTa          >  1:16842470/1‑68 (MQ=255)
                                                           aCCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTa          >  1:22713185/1‑68 (MQ=255)
                                                                   cACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTAATCggg    <  1:3532705/66‑1 (MQ=255)
                                                                   cACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTAATCggg    <  1:48400994/66‑1 (MQ=255)
                                                                   |                                                                   
GTTCATCATCACCGCCGGATTCACCGCCCGGCGTTCTTCTTCTGTCAATACCACCCGCAACCGCAGGCACGCCGGGCCGCCGCCATTCGCCATGCTTTCACGTAAATCAAAGACTTTTAGTTCGCTAATCGGGTT  >  CP009273/1821356‑1821490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.