| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2835842 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | noncoding (61/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 2835853 | NA (NA) | noncoding (72/79 nt) | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 919 total aligned reads displayed.
GATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTC > CP009273/2835786‑2835919 | aTGCGGCGTGAACGCGTTATCCGGCCTACATGTCGCAGGAACCATGAAGGCCCGATAAgcgcagctca > 1:48040089/1‑68 (MQ=25) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGCACCATGAAGGCCCGCTAAGCGCAGCGCa < 1:51319627‑M2/68‑2 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagcgc < 1:39374937/67‑1 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAagcgcagcgc < 1:15131702/67‑1 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCa < 1:10650170‑M2/68‑2 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCa < 1:11054115‑M2/68‑2 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCa < 1:47632817‑M2/68‑2 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCa < 1:6225311‑M2/68‑2 (MQ=255) aTGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCa < 1:5579830‑M2/68‑2 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCatc < 1:35559825‑M2/68‑4 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCatcgg > 1:35231192‑M2/1‑63 (MQ=255) gTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCa < 1:36186005/68‑1 (MQ=255) gAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAAt < 1:6490908/68‑1 (MQ=255) cTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGc < 1:9536520/67‑1 (MQ=255) ttATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCAt < 1:37643512/68‑1 (MQ=255) tCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATACGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:38398841/1‑68 (MQ=255) tCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:31895828/1‑68 (MQ=255) tCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:18632534/1‑68 (MQ=255) tCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:42643702/1‑68 (MQ=255) ccGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:18904313/1‑67 (MQ=255) ccGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTg > 1:10009583/1‑67 (MQ=255) cGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGc > 1:7941933/1‑68 (MQ=255) cGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGc > 1:41290369/1‑68 (MQ=255) cGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGc > 1:25978829/1‑68 (MQ=255) ggCCTTCATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa < 1:8268691/68‑1 (MQ=255) ggCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa < 1:41589437/68‑1 (MQ=255) ggCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa < 1:46026591/68‑1 (MQ=255) ggCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCa < 1:30543998/68‑1 (MQ=255) ccTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATc > 1:29006916/1‑68 (MQ=255) ccTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATc > 1:22337958/1‑68 (MQ=255) ccTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATc > 1:6982497/1‑68 (MQ=255) ccTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATc > 1:20147887/1‑68 (MQ=255) cTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCa > 1:13328653/1‑68 (MQ=255) cTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCa > 1:39970413/1‑68 (MQ=255) aCATGTCGCACGACCCATGACGGCCCGATAAGGGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga < 1:32714236/68‑1 (MQ=255) aCATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga < 1:4735040/68‑1 (MQ=255) aCATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga < 1:48453832/68‑1 (MQ=255) aCATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga < 1:1560221/68‑1 (MQ=255) aCATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga < 1:28581374/68‑1 (MQ=255) aTGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga > 1:25706136/1‑66 (MQ=255) tGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCaga > 1:11586442/1‑65 (MQ=255) gTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTg > 1:23812596/1‑68 (MQ=255) tCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTgg > 1:40735714/1‑68 (MQ=255) cGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCAc < 1:39657869/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:13655572/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:31631972/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:31044934/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:27868558/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:41903898/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:44521412/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:21715283/68‑1 (MQ=255) cATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCAt < 1:48857040/68‑1 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCaa > 1:16679610/1‑67 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:45644024/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:33084100/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:10407614/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:24504120/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:21989440/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg > 1:30019676/1‑68 (MQ=255) aaGGCCCGATAAGCGCAGCGCAACGGGCAATTTAGCATTTGGCATAAGAGCTGGTTCACCCCATCAAg > 1:38703646/1‑68 (MQ=38) aGGCCCGATAAGCGNNNNNCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa < 1:28175678/68‑1 (MQ=255) aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAg < 1:21204168/67‑1 (MQ=255) aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa < 1:37162774/68‑1 (MQ=255) aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa < 1:49814701/68‑1 (MQ=255) aGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa < 1:7578428/68‑1 (MQ=255) ggCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCAGCCCATCAAGa > 1:16352353/1‑67 (MQ=255) ggCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa > 1:20695182/1‑67 (MQ=255) ggCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa > 1:36739577/1‑67 (MQ=255) ggCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGa > 1:43638514/1‑67 (MQ=255) cccGATAAGCGCAGCGCatcgggccttcatggttcgtgcgacatgtaggccggataaggcgttcacg < 1:36553775‑M2/67‑51 (MQ=255) cccGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACa > 1:9136039/1‑68 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:4915337/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:17755109/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:50390901/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:50842680/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:17126827/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:14167031/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:43144125/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:25360905/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:26309300/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:26799712/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:11994955/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:32351640/68‑1 (MQ=255) cGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc < 1:38083072/68‑1 (MQ=255) tAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATc > 1:33942202/1‑65 (MQ=255) agcggagcgcATCGGGCAATTTAGCATTTGGCATCAGTGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:19543059/68‑1 (MQ=38) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCCCCCCATCAAGAACAGcccgg > 1:23460484/1‑65 (MQ=38) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:46880491/68‑1 (MQ=255) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:44877648/68‑1 (MQ=255) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:15968305/68‑1 (MQ=255) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:14596135/68‑1 (MQ=255) agcgcagcgcATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt < 1:12863606/68‑1 (MQ=255) gccgcgcaTCGGTCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTcc < 1:33352688/64‑1 (MQ=255) gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGt > 1:8690195/1‑65 (MQ=255) gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTcc < 1:29496086/67‑1 (MQ=255) gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTc < 1:228388/66‑1 (MQ=255) gcagcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTc < 1:12489016/66‑1 (MQ=255) agcgcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTg < 1:27446647/67‑1 (MQ=255) gcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGAtt < 1:44016993/67‑1 (MQ=255) gcaTCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTc < 1:3446765/68‑1 (MQ=255) | GATGCGGCGTGAACGCCTTATCCGGCCTACATGTCGCACGAACCATGAAGGCCCGATAAGCGCAGCGCATCGGGCAATTTAGCATTTGGCATCAGAGCTGGTTCACCCCATCAAGAACATCCCTGTCCTGATTC > CP009273/2835786‑2835919 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |