Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 246563 247227 665 238 [207] [214] 381 lafU pseudogene, lateral flagellar motor protein fragment

Only 100 of 238 total aligned reads displayed.

GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599
                                                                  |                                     
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTGAACAGCGTCa                                       <  1:3698022/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:33552968/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:25748440/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:43659139/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:5570556/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:40728877/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:17496598/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:3248418/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:32819129/67‑1 (MQ=255)
gCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCa                                       <  1:33925877/67‑1 (MQ=255)
 cAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGTCAATAAAGTTGATTGTCAACAGCGTCAg                                      <  1:825273/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:15404810/67‑1 (MQ=255)
  aGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGt                                     <  1:1492107/67‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATACAGTTGATTGTCAACAGCGTCAGTaa                                   <  1:49549245/66‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:14605502/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:31392961/68‑1 (MQ=255)
     aaCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 <  1:50661572/68‑1 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:9317822/1‑67 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:28937057/1‑67 (MQ=255)
      aCCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAAt                                 >  1:11864599/1‑67 (MQ=255)
         tCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGa                             <  1:32638337/68‑1 (MQ=255)
          cGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAg                            <  1:2530508/68‑1 (MQ=255)
           ggAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGc                           <  1:18978105/68‑1 (MQ=255)
           ggAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGc                           <  1:16312502/68‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:43002799/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:27056088/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:10418924/67‑1 (MQ=255)
             aaaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCg                          <  1:46768690/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:19299975/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:25554360/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:16737346/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:435306/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGt                         <  1:13459511/67‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:18060608/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:45864098/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        <  1:47022816/68‑1 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:2096707/1‑68 (MQ=255)
              aaTACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTg                        >  1:20287741/1‑68 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     >  1:20538885/1‑68 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:2771431/68‑1 (MQ=255)
                 aCGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGaaa                     <  1:32914557/68‑1 (MQ=255)
                  cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:6009583/68‑1 (MQ=255)
                  cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:40258702/68‑1 (MQ=255)
                  cGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAg                    <  1:38256616/68‑1 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:24396276/1‑68 (MQ=255)
                   gCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGc                   >  1:45888208/1‑68 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTATATCCGAGCGTGAAAGCa                  <  1:8539501/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:46145913/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:9710580/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:2953810/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:286809/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:42129999/67‑1 (MQ=255)
                     tCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCa                  <  1:51241914/67‑1 (MQ=255)
                      cGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCAtt                <  1:18757752/68‑1 (MQ=255)
                          cccTTTGGTGACGACAATAACGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAATCATTATcg            <  1:39644378/68‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcg            <  1:43030826/68‑1 (MQ=255)
                          cccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATc             <  1:34333742/67‑1 (MQ=255)
                           ccTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcg            >  1:10903580/1‑67 (MQ=255)
                             tttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgcc          >  1:1298001/1‑67 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:24257214/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:33284742/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:44592053/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:26568384/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:42764717/68‑1 (MQ=255)
                              ttGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:29886606/68‑1 (MQ=255)
                              ttGGTGACGACAAAAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        <  1:23211022/68‑1 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAATCATTATcgccgc        >  1:27420392/1‑67 (MQ=255)
                               tGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:5258151/1‑67 (MQ=255)
                                ggTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATcgccgc        >  1:1986641/1‑66 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCta    >  1:22943407/1‑67 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:33009366/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:19660517/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:7855535/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:6524558/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:6131749/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:47518162/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:2337077/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:36683150/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:3941108/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:26948999/67‑1 (MQ=255)
                                  tGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCt     <  1:37303331/67‑1 (MQ=255)
                                   gacgtcAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGctctat   <  1:686910/68‑3 (MQ=255)
                                   gacgacAATATAGTTGATTGTATACAGCGTCAGTATATCAGTGCGTGAAAGCATTATCGCCGCGCtat   <  1:37455750/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   >  1:2823479/1‑66 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:17171581/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:17450492/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:30546796/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:30010936/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:2014388/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:20583081/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:32212545/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:23077164/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:26384606/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:2379506/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:35584239/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:36391932/68‑3 (MQ=255)
                                   gacgacAATAAAGTTGATTGGCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtat   <  1:220343/68‑3 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  >  1:26136115/1‑64 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:4044204/67‑4 (MQ=255)
                                     cgacAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCtatt  <  1:6943029/67‑4 (MQ=255)
                                                                  |                                     
GCAGAAACCTCGGAAATACGCTCGGCCCCTTTGGTGACGACAATAAAGTTGATTGTCAACAGCGTCAGTAAATCCGAGCGTGAAAGCATTATCGCCGCGCTGCA  >  CP009273/246496‑246599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑