| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 232154 | 217 (0.600) | 11 (0.040) | 5/92 | NT | 5.5% | coding (336/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids |
| ? | CP009273 | = 232160 | 197 (0.670) | coding (330/468 nt) | rnhA | ribonuclease HI, degrades RNA of DNA‑RNA hybrids | |||||
Only 100 of 125 total aligned reads displayed.
AGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/232079‑232154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgctgcATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < CP009273/232160‑232095 AGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTT > 1:1068130/1‑68AGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTT > 1:27061597/1‑68AGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTT > 1:28661472/1‑68 GCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTG > 1:6041579/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:10735610/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:9703626/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:15881317/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:15823218/1‑68 CCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA > 1:14349228/1‑68 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:976409/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:3925202/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:19097685/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:16299117/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:20626954/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT < 1:21259629/68‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA < 1:13925228/67‑1 CAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGA < 1:7867795/67‑1 CAGTTCATCACAGCGGTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCGCATTTGATTTGAT < 1:3115859/68‑1 GTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT > 1:7327859/1‑66 GTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGAT > 1:5314283/1‑66 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTACCCCATTCCCATTTGATTTGATGCT > 1:9519463/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:28387804/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:23294913/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:3409381/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:26247486/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:24078795/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:19701777/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:193652/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:25652158/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:25642520/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:4902074/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT < 1:17634676/67‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:948536/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:5388130/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:875143/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT < 1:639847/67‑1 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:14717548/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:14339639/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:13437702/1‑67 TCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCT > 1:7869018/1‑67 CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:26254684/68‑1 CATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC < 1:21296762/68‑1 ATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC > 1:1358596/1‑67 ATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC > 1:10990110/1‑67 TGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATG > 1:4638044/1‑41 ACCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCC > 1:6274500/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCCGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCc > 1:3850575/1‑67 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCA > 1:12508898/1‑68 CCCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCA > 1:5310653/1‑68 CCATTCCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCAT > 1:27289194/1‑68 CCCATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAATGGGGAATGGGTTAAAGGCCATGCCG > 1:10408961/1‑68 CATTTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGcc > 1:10372842/1‑66 TTGATTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACAC > 1:15914600/1‑67 TTTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGA > 1:15592453/1‑68 TTGATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAA < 1:8836785/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:18824957/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:15037215/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:7200231/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:8724902/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAA < 1:11491784/68‑1 GATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAA > 1:20593259/1‑67 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:12079997/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:139641/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:8384891/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:8474772/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:544347/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:18055809/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:25275238/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:26299635/1‑68 ATGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAAC > 1:27333302/1‑68 ttCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG < 1:16492998/66‑1 TGCTGCATTGGGGCAGCATCAAATCGACT‑GGGAATGGGTTAAAGGGCATGCCGGACACCCGGAAAACG > 1:20086548/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACGCCCGGAAAACG > 1:21514105/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:12012843/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:25566056/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:11802161/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:17806122/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG > 1:17086178/1‑68 TGCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACG < 1:23356838/68‑1 GCTGCATTGGGGCAGCATCAATTCAAAT‑GGGAATGGGAAAAAGGCCATGCCGGCCAACCGGAAAACGA > 1:3086470/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:28111449/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:21703378/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:27115840/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:6789867/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:16772973/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:29087535/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:12357298/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:23493419/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:2453537/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGA > 1:8499244/1‑68 GCTGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGAAACCCGGAAAACGA > 1:25883354/1‑68 GCTGCATTCGGGCAGCATCAAATCAAAT‑GGGAATGGGGTAAAGGACATGCCGGACACCCGGAAAACGA > 1:24555712/1‑68 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:8400069/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:24112955/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:8364669/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:18377456/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:3640573/68‑1 TGCATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAAC < 1:11026759/68‑1 tCATTGTGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCTGACACCCGGAAAACGAACG < 1:20470789/67‑1 GCATTGGGGCAGCATCATATCAAAT‑GTGAATTGGTTAAAGGCCATGCGGGACACCCGGAAAACGAACG < 1:23953568/68‑1 AGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/232079‑232154‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgatgctgcATTGGGGCAGCATCAAATCAAAT‑GGGAATGGGTTAAAGGCCATGCCGGACACCCGGAAAACGAACG < CP009273/232160‑232095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |