| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 380 (1.060) | 18 (0.060) | 8/90 | NT | 6.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 253 (0.870) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 109 total aligned reads displayed.
TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641385‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641377‑1641443 TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:21274181/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:17885507/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:15382241/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:8713099/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:8967533/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:4895199/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:14086642/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:5769031/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:9016574/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:22958805/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:11557870/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAG > 1:11548178/1‑68TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCC < 1:22997815/66‑1TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCC < 1:21049714/66‑1 cCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:14809654/2‑68 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCGAGA < 1:24107464/68‑1 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:22346550/68‑1 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA > 1:20435924/1‑68 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:1984537/68‑1 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:25394410/68‑1 TCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGA < 1:17308055/68‑1 TCTTAAGGCGCGTTTCTGGTGTTC‑ATTTTCGGGGGGTTTGTTACTTGTTTTACCGGGGTTATGCCAGA < 1:20617486/68‑1 CTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:11029795/1‑68 CTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:24606178/1‑68 CTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAA > 1:17686616/1‑68 TAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAAC > 1:9358806/1‑68 AAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACG < 1:22575164/68‑1 AAGTCGCGTGGCTGGTGTTC‑ATTTTCGGGTGGTTTGGTACTTGTTTTACCGGGGATATGCCAGAAACG < 1:16687096/68‑1 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:19217928/68‑1 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:6615873/1‑68 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:15162328/1‑68 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:25299364/68‑1 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:29019484/1‑68 AGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC < 1:10770445/68‑1 GTCGCGTTTCTGGTGTTCAATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:19889648/1‑68 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:20122128/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:24134355/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:2709840/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:24723010/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:19696787/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:19000831/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:18728701/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:25445374/1‑67 GTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:14978842/1‑67 GTCGCGTTTCTGGTGTTA‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCAAGAAACGC > 1:26315479/1‑67 GTCGCGTTTCTGGTGTAC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:25624309/1‑67 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGAC < 1:3662389/68‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:25302248/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:25342432/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:25723858/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:3849368/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:12998336/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:11648902/66‑1 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:1005571/1‑65 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:21917468/1‑65 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:420168/1‑65 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:19988987/1‑65 CGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGC > 1:1755775/1‑65 CGCGTTTCTGGTGTTC‑ATTTTCGGGGGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:27617161/66‑1 CGCGGTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG < 1:12916642/66‑1 GCGTTTCAGGTGATC‑ATTTTCGGGTGGTTTGTTACTTGTATTACCGGGGATATGCCAGAAACGCGACT < 1:28387631/68‑1 tcaGGTGTTC‑ATTTTCGGGTGGTGTGTTACTTGTTTTACCGGGGACATGCCAGAAACGCGACTTAAGA < 1:20106119/65‑1 CTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAA < 1:11632328/68‑1 CTGGGGTTC‑ATTTTCGGGTGGGTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAA < 1:25972332/68‑1 TTC‑ATTTTCGGGTGGCTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTAC < 1:28049333/67‑1 C‑ATTTTCGGGTGGTGTGTTACTTCTTTTACCGGCGATACGCCAGAAACGCGACTTAAGAATCTACCCT < 1:16317684/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:24331970/68‑1 TTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:20534778/68‑1 TTTTCGGGTGGTGTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTAT < 1:707372/68‑1 CGGGTGGTTTGTTACTTGATTTCCCGGGGATAAGCCAGAAACGCGACTTAAGAATCTACCCTATGAAT < 1:25335898/68‑1 TGGTTTGTTACTTGTTTTACCGGGGTTATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:1570745/67‑1 TGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:14475493/67‑1 TGGCTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGA < 1:22867477/67‑1 TTGTTACTTGTTTTACCGGGGATATGCCAGAACCGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:8132589/68‑1 TTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:13529879/68‑1 TTGTTACTTGTTTTACCGGGGATATGCCACAAACGCGACTTAAGAATCTACCCTATGAATGGATATGC < 1:22932153/68‑1 CCGGCGATATCCCACAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGA < 1:14553736/68‑1 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA > 1:10746408/1‑68 CCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCA < 1:17882852/68‑1 AGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAA > 1:28658503/1‑67 AGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAA > 1:8617812/1‑67 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCACCCGAATCGATCTTGGTTTCAATCTT > 1:19638047/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCACCCGAATCGATCTTGGTTTCAATCTT > 1:19670442/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:28384378/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:12890964/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:14947701/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:21292194/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTT > 1:28352990/1‑68 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:8962160/67‑1 AACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCT < 1:26765639/67‑1 aaGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTT < 1:7699433/66‑1 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:21735778/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:23893909/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:25541851/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:29572861/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:17142222/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:26074839/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:15205214/1‑68 CGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTT > 1:12889900/1‑68 GACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > 1:9412648/1‑68 TTCTTAAGTCGCGTTTCTGGTGTTC‑ATTTTCGGGTGGTTTGTTACTTGTTTTACCGGGGATATGCCAGAAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1641385‑1641311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641377‑1641443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |