| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1641311 = | 380 (1.060) | 18 (0.060) | 8/90 | NT | 6.1% | intergenic (+317/+120) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related |
| ? | CP009273 | 1641377 = | 253 (0.870) | intergenic (+383/+54) | flxA/intK | Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related | |||||
Only 100 of 359 total aligned reads displayed.
CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641311‑1641443 | cgcgtttctggtgttcattttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgAc < 1:3662389‑M2/2‑1 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACTAACGACCCGAAATTGAACACCAGAAACGCGAc > 1:25443040‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGTACACCAGAAACGCGAc > 1:25624309‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGAc > 1:24134355‑M1/1‑67 (MQ=255) GCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACt > 1:15162328‑M1/1‑68 (MQ=255) CGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACtt < 1:22575164‑M1/68‑1 (MQ=255) GTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTa > 1:9358806‑M1/1‑68 (MQ=255) TTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAg > 1:11029795‑M1/1‑68 (MQ=255) TCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGa < 1:1984537‑M1/68‑1 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:22958805‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:17885507‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:8713099‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:8967533‑M1/1‑68 (MQ=255) CTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa > 1:4895199‑M1/1‑68 (MQ=255) GGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGaa < 1:21049714‑M1/66‑1 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAACATGAACACCAGAAACGCGACTTAAGAATCt < 1:20225729/67‑1 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:23456388/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:14771580/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:15343772/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:7978662/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:16280624/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:29309949/1‑67 (MQ=255) cATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCt > 1:18995070/1‑67 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTa < 1:6723568/67‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:23147559/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:4276854/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:23991568/68‑1 (MQ=255) atatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAc < 1:246217/68‑1 (MQ=255) tatCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTAcc < 1:614195/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:28203133/68‑1 (MQ=255) tCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCt < 1:8797224/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa < 1:19072446/68‑1 (MQ=255) ccccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTa > 1:15424142/1‑68 (MQ=255) ttttcgggtggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTAt < 1:24331970‑M2/19‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:2568610/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:5447202/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:1143392/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:11927598/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:12199951/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:12842651/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:3255893/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:6870778/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:20820336/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:20471024/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt < 1:5807172/68‑1 (MQ=255) cccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTAt > 1:2856175/1‑68 (MQ=255) ccGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATg < 1:26682210/68‑1 (MQ=255) cGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGa < 1:17395134/68‑1 (MQ=255) ggTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGaa < 1:4570122/68‑1 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATg > 1:26542619/1‑65 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:21863720/1‑68 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:1609290/1‑68 (MQ=255) gTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAAt > 1:13617335/1‑68 (MQ=255) cgggtggtttgttacttgatttcccggggataagccagaaacgcgACTTAAGAATCTACCCTATGAAt < 1:25335898‑M2/23‑1 (MQ=255) aaaaCAAGTAACAAACCACCCGAAAATGAACACCA‑AAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:27327041/68‑1 (MQ=255) ataCAATTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:29494131/66‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:21272548/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:26842614/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:22032717/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:9046539/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:1700437/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:8218638/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:19593128/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:1860878/68‑1 (MQ=255) aaaCAAGTAACAAACCACCCGAAAAAGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGa < 1:12482408/68‑1 (MQ=255) tggtttgttacttgttttaccggggatatgccagaaacgcgACTTAAGAATCTACCCTATGAATGGa < 1:14475493‑M2/26‑1 (MQ=255) aCAAGTAACAAACCACCCGAAAATGAACACCAGAACCGCGACTTAAGAATCTACCCTATGAATGGata < 1:20561577/68‑1 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:11786886/1‑67 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:19902220/1‑67 (MQ=255) aaGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGatat > 1:24179151/1‑67 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:27755909/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:26080112/68‑1 (MQ=255) aGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGc < 1:3812382/68‑1 (MQ=255) aCAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTc > 1:5230043/1‑68 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:19286066/68‑1 (MQ=255) cAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCa < 1:14118472/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:745087/1‑67 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:16668552/68‑1 (MQ=255) aaCCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAc < 1:5768351/68‑1 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:10004687/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:1082305/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAAcc > 1:23684298/1‑68 (MQ=255) accaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGAAATCAAGTCAAcc > 1:9559335/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:28871464/1‑68 (MQ=255) ccaccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCg > 1:6408040/1‑68 (MQ=255) caccCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGa < 1:22788427/68‑1 (MQ=255) cccGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGaa > 1:17152636/1‑67 (MQ=255) cGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCg > 1:10165004/1‑68 (MQ=255) aaaaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGa > 1:13427698/1‑67 (MQ=255) aaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCt > 1:25112994/1‑68 (MQ=255) aaTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCt > 1:14950403/1‑68 (MQ=255) aTGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCaa > 1:136472/1‑55 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGtt > 1:1766957/1‑68 (MQ=255) acacCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGt < 1:21599691/67‑1 (MQ=255) ccagaaacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCa > 1:10746408‑M2/12‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:21292194‑M2/7‑68 (MQ=255) aacgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtt > 1:28352990‑M2/7‑68 (MQ=255) aagcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCttt < 1:7699433‑M2/63‑1 (MQ=255) cgcgACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCtttt > 1:29572861‑M2/5‑68 (MQ=255) gACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTa > 1:9412648‑M2/2‑68 (MQ=255) | CGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATGAACACCAGAAACGCGACTTAAGAATCTACCCTATGAATGGATATGCACTCAACCGAATCGATCTTGGTTTCAATCTTTTTTA > CP009273/1641311‑1641443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |