| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2681763 = | 283 (0.790) | 13 (0.040) | 6/94 | NT | 5.3% | coding (400/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK |
| ? | CP009273 | 2681792 = | 229 (0.760) | coding (371/1335 nt) | glrR | response regulator regulating glmY sRNA in two‑component system with sensor protein GlrK | |||||
GACAAAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2681838‑2681763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgcgGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC > CP009273/2681792‑2681858 GACAAAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACG < 1:16823713/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:8528696/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:2071059/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:15839036/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:22560928/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:25289128/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:28853398/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:14204270/68‑1 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTG > 1:1925168/1‑67 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTG > 1:15925620/1‑67 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTG > 1:29171445/1‑67 AAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTG > 1:3724327/1‑67 AAGACGCGCTATATCAGGCAATAGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGG < 1:1447788/68‑1 AGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGC < 1:27076156/68‑1 GACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGC > 1:19689757/1‑67 ACGCGCTATATCAGGCAATTGACGATCCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGC > 1:8840953/1‑68 CGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCG > 1:5565083/1‑68 tCGCTATATCAGGCAATTGACGATCCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGG < 1:637222/67‑1 GCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGG < 1:770364/68‑1 GCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGG < 1:21051524/68‑1 GCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGA < 1:26303654/67‑1 GCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGA < 1:6132329/67‑1 TATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTG < 1:12666153/68‑1 ATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGC < 1:15735776/68‑1 TATCAGGCAATTGCCGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCGGGCGCGGATTGCT < 1:759436/68‑1 TATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGCT < 1:3651102/68‑1 TATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGCT < 1:12021825/68‑1 TATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGCT < 1:14649863/68‑1 TATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCGGGCGCGGATTGCT < 1:10730226/68‑1 CGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGCTCCAGCGCATCGTC < 1:13304335/67‑1 gcgGGAGCAATCCCCGCCAGCCACCGATGACCGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGC < 1:400521/64‑1 GCTGGCGCAATCCGCGCCACCCACCGATGAACGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGC < 1:21050333/67‑1 GCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGC < 1:12049745/67‑1 GCTGGAGCAAGCCGCGCCAGCCACCGCTGACCGCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGC < 1:24926070/67‑1 GAGCAATCCGCGCCCGCCACCGATGACCGGGGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGA < 1:11269072/67‑1 AGCAATCCGCGCCAGCCACCGATGACCGCGGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGAT < 1:23986385/67‑1 ggtTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGG < 1:16317215/65‑1 GCTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGG < 1:23847646/67‑1 CTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTG > 1:2649240/1‑68 CTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTG > 1:18547033/1‑68 CTGGCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTG > 1:12228646/1‑68 GCGCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGG > 1:27415171/1‑68 GCGGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAA > 1:619196/1‑68 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC < 1:28914398/68‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC < 1:1150734/68‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:22875656/67‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:11974621/67‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:10403570/67‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:8016972/67‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:16094736/67‑1 GGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAA < 1:19489258/67‑1 GACAAAGACGCGCTATATCAGGCAATTGACGATGCGCTGGAGCAATCCGCGCCAGCCACCGATGAACGCTGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2681838‑2681763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgcgGATTGCTCCAGCGCATCGTCAATTGCCTGATATAGCGCGTCTTTGTCGACAGGCTTGGTGAGGAAAC > CP009273/2681792‑2681858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |